Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0620
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   2e-07
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.66 
SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)                    31   1.1  
SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)                     31   1.1  
SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = -2

Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
           QMAG++DCYTS RG T TLGNF             YLTPD+W+
Sbjct: 163 QMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWK 205


>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 503 NTLENIHLHMSKPNGIALNIKVQNIKLHSIVSERVLE*MTSCIELVKLLSKLT 345
           N  +N+H H +KP G   + KV   K H   S  V   +  C   + +L + T
Sbjct: 818 NATDNLHTHETKPGGALSSTKVSYCKSHVYKSSGVFIILLRCENRLSVLEEST 870


>SB_10909| Best HMM Match : TFIIB (HMM E-Value=0.14)
          Length = 666

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 142 GIASSDGWCTGLLHVSSWFNWH-LGKFC*SHIRCHCQDICLPH 17
           G+A   G+  G  HV +   W+ L   C  H++ H Q  C PH
Sbjct: 39  GVADEGGYLKGQCHVYTISFWYILWSLC--HLQGHTQSTCAPH 79


>SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)
          Length = 129

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 509 HNNTLENIHLHMSKPNGI-ALNIKVQNIKLHSIVSERV 399
           HN    N+  H  K + + A N+KV N+K+H++ +  V
Sbjct: 50  HNVKTHNVKTHNVKTHNVKAHNVKVHNVKVHNVKAHNV 87



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 509 HNNTLENIHLHMSKPNGIAL-NIKVQNIKLHSIVSERV 399
           HN    N+  H  K + + + N+KV N+K H++ +  V
Sbjct: 55  HNVKTHNVKTHNVKAHNVKVHNVKVHNVKAHNVKTHNV 92



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 509 HNNTLENIHLHMSKPNGI-ALNIKVQNIKLHSIVSERV 399
           HN    N+  H  K + + A N+KV N+K H++ +  V
Sbjct: 80  HNVKAHNVKTHNVKVHNVKAHNVKVHNVKTHNVKAHNV 117


>SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 192 VFSVQKTWLMGLPFCIGSYHKHKIFD 269
           + + +K W + LP  +G YH  K+ D
Sbjct: 208 ITTTRKCWTLPLPASVGHYHYKKVLD 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,071
Number of Sequences: 59808
Number of extensions: 379975
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)