Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0620
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    53   2e-07
Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 28/42 (66%)
 Frame = -2

Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
           MAG++DCYT+A+GST TLGNF             YLTPDLW+
Sbjct: 212 MAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWK 253


>Z67995-2|CAA91944.2|  458|Caenorhabditis elegans Hypothetical
           protein M153.2 protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 413 LCCVI*YFAPLY*VQYHLVCSCVDGCFPKCCY 508
           L C   ++AP+  + +HLV   V   F  CC+
Sbjct: 383 LSCAAFFYAPVLQLYWHLVILVVTSLFAACCF 414


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +1

Query: 313 IYLY*LQKFLTVSLLSNFTSSMQDVIYSKTLSETMLCNLIFCTFILSAIPFGLL-MCRWM 489
           + LY ++K   V+   +F +S      SK  S T L   +  TF+LS +P G+L + + +
Sbjct: 232 VLLYEMKKTRKVATSRSFQNSN-----SKDRS-TKLVTFVTITFLLSTVPLGILYIIKSI 285

Query: 490 FSKVLL*FSNKPKLFLGKLEALFKFI 567
           F + L+  SN    F  KL+++F  I
Sbjct: 286 FLQSLV-ISN----FANKLQSIFVLI 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,653
Number of Sequences: 27780
Number of extensions: 306908
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)