Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0620
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.3  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 542 LPKNNFGLLLNHNNTLENIHLHMSKPNGI 456
           +P N  G  LNH+  LEN  ++  +  G+
Sbjct: 201 IPANYSGWYLNHDYNLENKLIYFIEDIGL 229


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 542 LPKNNFGLLLNHNNTLEN 489
           +P N  G  LNH+  LEN
Sbjct: 201 IPANYSGWYLNHDYNLEN 218


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 50  TLPLPRHMP 24
           TLPLP+H+P
Sbjct: 503 TLPLPQHLP 511


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 50  TLPLPRHMP 24
           TLPLP+H+P
Sbjct: 418 TLPLPQHLP 426


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 50  TLPLPRHMP 24
           TLPLP+H+P
Sbjct: 737 TLPLPQHLP 745


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 41  LPRHMPTSL 15
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 182 ITRIKHFYMACILWYC 135
           +T+ +H  M+C  W C
Sbjct: 1   MTKGRHVVMSCCCWCC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,250
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)