Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0620
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 44 1e-04
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 44 1e-04
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 44 1e-04
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 44 1e-04
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 44 1e-04
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 44 1e-04
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 31 0.71
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 31 0.71
At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /... 30 1.6
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa... 28 6.6
At3g07770.1 68416.m00947 heat shock protein-related strong simil... 27 8.8
At1g15780.1 68414.m01893 expressed protein 27 8.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
Q AG+ D +TS+RGST TLGNF +LTP+ W+
Sbjct: 200 QFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWK 242
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
Q AG+ D +TS+RGST TLGNF +LTP+ W+
Sbjct: 209 QFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWK 251
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
Q AG+ D +TS+RGST TLGNF +LTP+ W+
Sbjct: 208 QFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWK 250
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
Q AG+ D +TS+RGST TLGNF +LTP+ W+
Sbjct: 208 QFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWK 250
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
Q AG+ D +TS+RGST TLGNF +LTP+ W+
Sbjct: 208 QFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWK 250
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
Q AG+ D +TS+RGST TLGNF +LTP+ W+
Sbjct: 208 QFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWK 250
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 267 QISCVYDSYRYKRVTPLTRFFELK 196
++ C+ D+ +KR+TPL RFF K
Sbjct: 486 KLGCIEDTGNHKRITPLLRFFSSK 509
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 267 QISCVYDSYRYKRVTPLTRFFELK 196
++ C+ D+ +KR+TPL RFF K
Sbjct: 489 KLGCIEDTGNHKRITPLLRFFSSK 512
>At4g32380.1 68417.m04611 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 354
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 545 NLPKNNFGLLLNHNNTLENIHL--HMSKPNGIALNIK-VQNIKLHS 417
N P+N+ +L ++N TL N+HL S PN ++I QNI + S
Sbjct: 67 NSPRNHITILDSNNATLSNLHLIAPASSPNTDGIDISHSQNINIMS 112
>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1240
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 291 YMFKISLHIFVLVTKILDCQFTEQFHQLY 377
Y+ ISL++ + V K+L F Q QLY
Sbjct: 370 YLIPISLYVSIEVVKVLQAHFINQDLQLY 398
>At3g07770.1 68416.m00947 heat shock protein-related strong
similarity to heat-shock protein [Secale cereale]
GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 803
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 267 QISCVYDSYRYKRVTPLTRFF 205
++ C+ D +KR+ PL RFF
Sbjct: 512 KLGCIEDRENHKRIAPLLRFF 532
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 237 IGSYHKHKIFDRYLNFTNYMFKISLHIFVLVTK 335
I + + KIF LN T+Y+ KIS+ + + TK
Sbjct: 60 IAARFEEKIFSGALNQTDYLRKISMKMLTMETK 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,764
Number of Sequences: 28952
Number of extensions: 272599
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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