Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0619
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.3  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 CVSQNTGTCPESSCACPETSCACPETSCACPE 240
           C + N G C       P  +   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 CVSQNTGTCPESSCACPETSCACPETSCACPE 240
           C + N G C       P  +   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 626  FWSLNPSLFGLRCNLQFGNCWLGFG 552
            FW    +    R +L++G  WL FG
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFG 1007


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 530 CGNSXQNCQTQASSFQIEDCTEAQKD 607
           C NS +N     S+     C EA KD
Sbjct: 163 CCNSPENNTCSISNSYTNGCVEALKD 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,987
Number of Sequences: 438
Number of extensions: 1050
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)