Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0618
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   118   6e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   118   6e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    30   0.19 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.2  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.5  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.5  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   7.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.6  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   9.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  118 bits (284), Expect = 6e-28
 Identities = 51/66 (77%), Positives = 61/66 (92%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score =  109 bits (263), Expect = 2e-25
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 433
           KKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79  KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138

Query: 434 ERPRS 448
           E+PR+
Sbjct: 139 EKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  118 bits (284), Expect = 6e-28
 Identities = 51/66 (77%), Positives = 61/66 (92%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 75  IKNGKK 80



 Score =  109 bits (263), Expect = 2e-25
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 433
           KKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKK
Sbjct: 79  KKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138

Query: 434 ERPRS 448
           E+PR+
Sbjct: 139 EKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 147 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           G+   +G+      V+ K+PNSA+RK  RV+L
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 188 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 18
           ++F +D++ C  CT   V+LP       LE F  PS    V H++ A  +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 387 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 277
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 84  WADKEFKKAHMGTKWKANPFGGASHAKGIV 173
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 445 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 323
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 544 CTQYLLCTRILHL*TYKQRASRQQVTYHNVH 452
           C QY      +H+   K+    QQ+TY  VH
Sbjct: 277 CLQYTNTDLEMHIWEEKETIYEQQMTYQKVH 307


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 320 VLRRFLRCGLGNRHGGRMRSLSSVLNELYTDAFA 219
           +++RFL     NR+   + S+  ++N LYTD F+
Sbjct: 802 IVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFS 835


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 275 PRDGCLNHIEENDEVLVAGFGRKGHAVG 358
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,642
Number of Sequences: 5004
Number of extensions: 50189
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)