Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0618
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              129   2e-30
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              125   2e-29
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   1.9  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                29   3.3  
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.3  

>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  129 bits (311), Expect = 2e-30
 Identities = 58/65 (89%), Positives = 64/65 (98%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 433
           KK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKK
Sbjct: 79  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138

Query: 434 ERPRS 448
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 24/28 (85%), Positives = 27/28 (96%)
 Frame = +3

Query: 177 EKVGVEAKQPNSAIRKCVRVQLIKNGRK 260
           ++ GVEAKQPNSAIRKCVRVQLIKNG+K
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  125 bits (302), Expect = 2e-29
 Identities = 56/66 (84%), Positives = 62/66 (93%)
 Frame = +3

Query: 63  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 242
           +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14  SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73

Query: 243 IKNGRK 260
           IKNG+K
Sbjct: 74  IKNGKK 79



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 33/40 (82%), Positives = 39/40 (97%)
 Frame = +2

Query: 254 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 373
           KK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 78  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -1

Query: 471 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 292
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 291 RQPSRGTNAV 262
           +Q  R  N V
Sbjct: 67  QQCWRSLNTV 76


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 107 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 205
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 414 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKCKILVHNKYCVQ 545
           +S+KR RS+  + C    V CC E     V KC   V  K CV+
Sbjct: 1   MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 414 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKCKILVHNKYCVQ 545
           +S+KR RS+  + C    V CC E     V KC   V  K CV+
Sbjct: 1   MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 287  NRHGGRMRSLS--SVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTE-RVSLPFRT 117
            +R+GGRM+SL+  S  N +  D      +   + + +  ED++  +  +T   + LP+RT
Sbjct: 1851 SRNGGRMKSLANRSGRNGVIRDLLGSQALDTAASFESLTEDESAAITGSTVCSIPLPYRT 1910


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 175  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 80
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,533
Number of Sequences: 59808
Number of extensions: 425926
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)