Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0617
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   155   5e-39
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.6  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.8  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   5.0  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  155 bits (377), Expect = 5e-39
 Identities = 69/99 (69%), Positives = 86/99 (86%)
 Frame = +3

Query: 216 KNRQTREHLLVFFPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 395
           K +   E  L   PIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 396 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGT 512
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWGT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGT 145



 Score =  106 bits (255), Expect = 3e-24
 Identities = 45/66 (68%), Positives = 55/66 (83%)
 Frame = +2

Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
           G  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGST 203

Query: 686 WHLGKF 703
             LG F
Sbjct: 204 KTLGNF 209



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +1

Query: 157 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+S   K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 265 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 375
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 154 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 29
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 341 LFLYRHDLKNLIIQGRAEEEINDLEFFDWKENK*MLSSLSIFPSRTRRPSLVTGTHSF 168
           L +Y   L+NL+ QG+A E +N ++            +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 457 LLSLLSCQFYQSEEVTGEQDRKATHRPLQGHRQVWFRNSPADSCPSWYW 603
           LLS+L      S+EV  E      H+ ++     + +    +SC  W+W
Sbjct: 385 LLSVLQTVEQISKEVDKEYFSSTNHQLIRSEIGEYCKTLDINSCREWFW 433


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 335 LYRHDLKN--LIIQGRAEEEINDLEFFDWKENK*MLSSL 225
           + R +L N  LI++    EEI+D +F D   N  +++SL
Sbjct: 846 IQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASL 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,806
Number of Sequences: 5004
Number of extensions: 66040
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)