Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0617
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 147 7e-36
07_01_0756 + 5819367-5820038,5820847-5821005 143 1e-34
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 76 3e-14
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 31 1.3
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.9
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 28 6.9
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 28 6.9
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 6.9
03_04_0138 - 17624099-17624141,17624619-17625166 28 6.9
01_04_0066 - 15654796-15655098,15655268-15655392,15657249-156576... 28 6.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 147 bits (357), Expect = 7e-36
Identities = 67/87 (77%), Positives = 78/87 (89%)
Frame = +3
Query: 255 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 434
P+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KE
Sbjct: 71 PVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKE 129
Query: 435 VATAIRGAIILAKLSVLPVRRGYWGTR 515
VATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 130 VATAIRGAIILAKLSVVPVRRGYWGNK 156
Score = 116 bits (278), Expect = 3e-26
Identities = 51/73 (69%), Positives = 62/73 (84%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGST 213
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 214 KTLGNFVKATFDC 226
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +1
Query: 157 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++++++WVPVTKLGRLV+EG+ K+E IYL S K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 143 bits (347), Expect = 1e-34
Identities = 68/100 (68%), Positives = 81/100 (81%)
Frame = +3
Query: 216 KNRQTREHLLVFFPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 395
K + E L P+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 396 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR 515
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159
Score = 117 bits (282), Expect = 9e-27
Identities = 52/73 (71%), Positives = 62/73 (84%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGST 216
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 217 KTLGNFVKATFDC 229
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1
Query: 157 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++++++WVPVTKLGRLV+E KI K+E IYL S K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 76.2 bits (179), Expect = 3e-14
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +2
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTWHLGK 700
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST L
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 701 F 703
F
Sbjct: 107 F 107
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 375 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 470
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 482
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 483 LPV 491
+ V
Sbjct: 231 VTV 233
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 652 YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYL--VPQ*PLRTG 485
Y ++++L+++W H+ R + PD G + DLA W S+ V Q P TG
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA----WRSFFQDVEQAPPPTG 463
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 437 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 321
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 493 EEVTGEQDRKAT--HRPLQGHRQVWFRNSPADSCPSW 597
E G+++ KA H L G + W+ N PA+S SW
Sbjct: 232 EAAHGDENTKAKVIHLALDGIARFWYFNLPANSIYSW 268
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 490 SEEVTGEQDRKATHRPLQGHRQVWFRNSPADSCPSWYWYCVCASS*EASSDGWCTGL 660
S T Q R H PL R +WF P W+++ V A EAS+ + G+
Sbjct: 39 STNPTNNQARLPPHDPLGSRRSIWFG-------PPWHFWGVIAEVVEASAREYEEGM 88
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 112 DRHGLYLHRVIRIRRENRHVHRLEQRPP 29
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>03_04_0138 - 17624099-17624141,17624619-17625166
Length = 196
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 555 LPVTLQGTVCGFPILFPSNL 496
LPV + G + GF LFP+NL
Sbjct: 58 LPVAMGGAMAGFGFLFPNNL 77
>01_04_0066 -
15654796-15655098,15655268-15655392,15657249-15657603,
15658236-15658405,15659404-15659608
Length = 385
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 229 LESIYLFSFQSKNSRSLISSSARP*MMRFLRSCLYRNKHVPD 354
L S LF+F KN+ S + S P RFL+ RN+ P+
Sbjct: 255 LFSSRLFNFTGKNNPSDVDPSLNPSYARFLQGQCRRNQQDPN 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,552,880
Number of Sequences: 37544
Number of extensions: 499850
Number of successful extensions: 1437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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