Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0617
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 3e-44
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.43
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 30 1.7
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 3.0
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 4.0
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 4.0
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 4.0
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 4.0
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31) 29 5.3
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4) 29 5.3
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 7.0
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.0
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_22739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 28 9.3
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 175 bits (426), Expect = 3e-44
Identities = 83/98 (84%), Positives = 91/98 (92%), Gaps = 1/98 (1%)
Frame = +3
Query: 225 QTREHLLVF-FPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 401
+T EH+ +F PIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 402 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR 515
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNK 121
Score = 127 bits (307), Expect = 8e-30
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS RG T
Sbjct: 119 GNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQT 178
Query: 686 WHLGKF 703
LG F
Sbjct: 179 ATLGNF 184
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +1
Query: 175 WVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
WVPVTKLGRLV++ KI LE IYLFS K
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 476 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 297
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 296 RAEEEI 279
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 476 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 297
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 296 RAEEEI 279
R ++E+
Sbjct: 577 RNQDEL 582
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 199 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 89
G +W + L LP H DHDR H RH +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -2
Query: 449 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 318
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 416
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 416
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 416
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 416
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 416
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 303 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 416
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 479 SSTSPKRLLGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
S T P G ++G P +TG G RL P ++ PV
Sbjct: 156 SITGPVGYAGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 203
>SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31)
Length = 330
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 479 SSTSPKRLLGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
S T P G ++G P +TG G RL P ++ PV
Sbjct: 43 SITGPVGYAGKRLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 90
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 479 SSTSPKRLLGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
S T P G ++G P +TG G RL P ++ PV
Sbjct: 106 SITGPVGYTGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 153
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +2
Query: 479 SSTSPKRLLGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPV 622
S T P G ++G P +TG G RL P ++ PV
Sbjct: 190 SITGPVGYTGERLGPTAHAPASITGPVGYADERLGPTAHAPASITGPV 237
>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
Length = 394
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 658 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 509
+LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 36 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 658 ILYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 509
+LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 679 TTS*RVAI-LYTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 509
T S +++I LYT + + RN++ +NT T R Q + TT+ L D LS LV
Sbjct: 136 TDSEKLSIPLYTRNSTRTARNYQYYNTRETLCR-QRETINTTIHAKLYTDSEKLSILV 192
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 679 TTS*RVAIL-YTSHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDLARDGVWLSYLV 509
T S +++IL YT + + RN++ +NT T R Q + TT+ L D LS L+
Sbjct: 183 TDSEKLSILVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILL 239
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 353 TAHTFQGICCHWRQQRSYW 409
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 351 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 440
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -1
Query: 660 QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFP 517
+SC PA + G G D G + TEPH QG P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191
>SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -3
Query: 292 PRKKSMISNSLIGKKTSKCSRVCRFFLREQDGRVW*QEPTLSGLPC 155
PR +++ N+L+G +C +V + + +++ V P + PC
Sbjct: 299 PRPSTVLHNTLVGVGIGECRKVFCYDVEDKETYVLPDLPQVQAFPC 344
>SB_22739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 505 GEQDRKATHRPLQGHRQVWFRNSPAD-SCPSWYWYCVCASS*EASSDGW 648
GE + HR L+ + +F + SC + +WYC A S + ++D W
Sbjct: 275 GEWGKYGLHRHLRLYNYPFFWSGHFTFSCINSFWYCDDAGSDQNANDFW 323
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 478 DSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 347
D+L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,634,791
Number of Sequences: 59808
Number of extensions: 566410
Number of successful extensions: 1595
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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