Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0617
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   144   6e-35
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    28   6.2  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  144 bits (349), Expect = 6e-35
 Identities = 73/101 (72%), Positives = 81/101 (80%)
 Frame = +3

Query: 213 RKNRQTREHLLVFFPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 392
           +K     E  L   PIKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70  KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128

Query: 393 NNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR 515
           + GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWG +
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score =  122 bits (295), Expect = 2e-28
 Identities = 55/66 (83%), Positives = 59/66 (89%)
 Frame = +2

Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
           GNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGST 226

Query: 686 WHLGKF 703
             LG F
Sbjct: 227 ATLGNF 232



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/35 (62%), Positives = 24/35 (68%)
 Frame = +1

Query: 160 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
           E + EW PVTKLGRLV+E KI  LE IYL S   K
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 494 KRLLGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSA 673
           ++L   ++ +  T+      +C +  V     PRG G+   P   K+ +  G++D Y   
Sbjct: 195 RKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKV 254

Query: 674 RGST 685
            GST
Sbjct: 255 EGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 494 KRLLGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSA 673
           ++L   ++ +  T+      +C +  V     PRG G+   P   K+ +  G++D Y   
Sbjct: 195 RKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKV 254

Query: 674 RGST 685
            GST
Sbjct: 255 EGST 258


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 646 SHLKKLLRNWRRHNTSTTRGRNQPDCYGTTLAGDL 542
           +H K + +N RR+    +R +N+   YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 380 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 294
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 380 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 294
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 722 SVCGFSKISQGAKLNHELTCSNPVHQPSEEAS*ELAQTQYQYHEGQ 585
           ++C F++  +G     E+T S PVH        EL Q  Y Y+  Q
Sbjct: 101 TLCPFTEYKEGEAFTVEVTSSRPVHYNFRA---ELVQNFYLYNNSQ 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,498
Number of Sequences: 27780
Number of extensions: 396634
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)