Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0617
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 162 3e-40
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 161 5e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 160 1e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 160 1e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 160 1e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 160 1e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 30 1.9
At1g53180.1 68414.m06027 expressed protein 29 2.5
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 3.3
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 29 4.4
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.8
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 5.8
At3g63100.1 68416.m07087 glycine-rich protein 28 7.6
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 7.6
At2g14590.1 68415.m01635 hypothetical protein 28 7.6
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 7.6
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 162 bits (393), Expect = 3e-40
Identities = 73/98 (74%), Positives = 85/98 (86%)
Frame = +3
Query: 222 RQTREHLLVFFPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 401
+Q + L P+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 402 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR 515
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167
Score = 116 bits (280), Expect = 1e-26
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 224
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 225 KTLGNFVKATFDC 237
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++++WVPVTKLGRLV G I ++E IYL S K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 161 bits (391), Expect = 5e-40
Identities = 70/87 (80%), Positives = 82/87 (94%)
Frame = +3
Query: 255 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 434
P+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKE
Sbjct: 72 PVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKE 131
Query: 435 VATAIRGAIILAKLSVLPVRRGYWGTR 515
VATAIRGAIILAKLSV+P+RRGYWG +
Sbjct: 132 VATAIRGAIILAKLSVVPIRRGYWGNK 158
Score = 116 bits (280), Expect = 1e-26
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 215
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 216 KTLGNFVKATFDC 228
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++++WVPVTKLGRLV+EGKI K+E IYL S K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 160 bits (388), Expect = 1e-39
Identities = 71/87 (81%), Positives = 81/87 (93%)
Frame = +3
Query: 255 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 434
P+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 80 PVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Query: 435 VATAIRGAIILAKLSVLPVRRGYWGTR 515
VATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 140 VATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 116 bits (280), Expect = 1e-26
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 224 KTLGNFVKATFDC 236
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++ +WVPVTKLGRLV + KI KLE IYL S K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 160 bits (388), Expect = 1e-39
Identities = 71/87 (81%), Positives = 81/87 (93%)
Frame = +3
Query: 255 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 434
P+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 80 PVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Query: 435 VATAIRGAIILAKLSVLPVRRGYWGTR 515
VATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 140 VATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 116 bits (280), Expect = 1e-26
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 224 KTLGNFVKATFDC 236
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++ +WVPVTKLGRLV + KI KLE IYL S K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 160 bits (388), Expect = 1e-39
Identities = 71/87 (81%), Positives = 81/87 (93%)
Frame = +3
Query: 255 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 434
P+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 80 PVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Query: 435 VATAIRGAIILAKLSVLPVRRGYWGTR 515
VATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 140 VATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 116 bits (280), Expect = 1e-26
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 224 KTLGNFVKATFDC 236
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++ +WVPVTKLGRLV + KI KLE IYL S K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 160 bits (388), Expect = 1e-39
Identities = 71/87 (81%), Positives = 81/87 (93%)
Frame = +3
Query: 255 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 434
P+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKE
Sbjct: 80 PVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139
Query: 435 VATAIRGAIILAKLSVLPVRRGYWGTR 515
VATAIRGAIILAKLSV+PVRRGYWG +
Sbjct: 140 VATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 116 bits (280), Expect = 1e-26
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +2
Query: 506 GNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 685
GNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 686 WHLGKFC*SHIRC 724
LG F + C
Sbjct: 224 KTLGNFVKATFDC 236
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +1
Query: 163 DQKEWVPVTKLGRLVREGKIDKLESIYLFSFQSK 264
++ +WVPVTKLGRLV + KI KLE IYL S K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 306 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 485
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 486 PV 491
V
Sbjct: 209 QV 210
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 521 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 682
K T P + G G+ V L PA GTG+++ + +L+MAGV++ GS
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGS 267
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 352 PARVCFCTGMILRTSSFRDGPRKKSMISNSLIGKKTSK 239
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 404 YWFGCEV----QQGSRHCHSRRYYPC*AVSSTSPKRLLGNKIGK 523
YWF + +G R+CHS Y P + +STSP+++ + IGK
Sbjct: 18 YWFFENLFTRRSRGLRYCHSDPY-PSSSSTSTSPEKMGDSDIGK 60
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 148 HDHGRDHDRVHEDRHGLYLH 89
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 555 LPVTLQGTVCGFPILFPSNLF 493
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 372 AFVAIGDNNGHIGLGVKCSKE 434
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 457 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMILRTSSFR 299
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -3
Query: 142 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 50
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 148 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 44
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At2g14590.1 68415.m01635 hypothetical protein
Length = 323
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 290 EEEINDLEFFDWKENK 243
EE I DLEF W+ENK
Sbjct: 224 EESIKDLEFAMWRENK 239
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 527 HTVPCKVTGKCGSVTVRL 580
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,538
Number of Sequences: 28952
Number of extensions: 377166
Number of successful extensions: 1106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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