Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0616
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 89 4e-19
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 89 4e-19
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 89 4e-19
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 41 1e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.049
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 4.3
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 4.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 5.6
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 5.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 5.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.6
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 5.6
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 24 9.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 88.6 bits (210), Expect = 4e-19
Identities = 39/55 (70%), Positives = 48/55 (87%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
++ +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 385 IEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 88.6 bits (210), Expect = 4e-19
Identities = 39/55 (70%), Positives = 48/55 (87%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
++ +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 385 IEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 88.6 bits (210), Expect = 4e-19
Identities = 39/55 (70%), Positives = 48/55 (87%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
++ +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 385 IEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.7 bits (91), Expect = 1e-04
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 168
P G I L P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 610 PMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.049
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 67 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 159
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 4.3
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -2
Query: 302 PSKHLSVNEVSQLYEKCAVNSSSYFLPL---VAFSAALVTLPPPASLKLTALMTPTATVC 132
PS ++V S +Y A +S Y + S +VTLPPPAS ++ T T T
Sbjct: 150 PSTAITVTANSTIYSS-ATSSFPYSTDVSVSTGTSTDIVTLPPPAS-STSSFSTITNTSM 207
Query: 131 LMSRTAKRPRGGNSWKDST 75
+ S ++ G+ + +++
Sbjct: 208 IPSSSSFTTTTGSPYYNTS 226
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = -2
Query: 308 FFPSKHLSVNEVSQLYEKCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTAT 138
+ P + N+VSQ S+Y+ P A+ PP K T P+ T
Sbjct: 194 YIPPVNYGANQVSQQPNPQLPGVSNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMT 250
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -2
Query: 359 LHYKPCKKYRKGMSL*PFFPSKHLSVNEVSQLYEKCAVNSSSYFLPLVAF 210
++YKP + MS P++PS ++ ++++ + K + F P++ F
Sbjct: 121 VNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFF 170
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 356 HYKPCKKYRKGMSL*PFFPSKHLSVNEVSQLYEKCAVNSSSYFLPLVAFS 207
HY+ ++ G++L + PS L V L +NS Y + +FS
Sbjct: 173 HYQALPDFQFGITLKEYVPSSMLPYKGVLGLAASTEINSIDYSDSISSFS 222
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 290 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 385
G S E S+ IFY FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -2
Query: 224 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 114
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 197 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 75
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 290 LSVNEVSQLYEKCAVNSSSYFL 225
LS+N S YEK V+S + FL
Sbjct: 140 LSINPASTSYEKLTVSSPNSFL 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,651
Number of Sequences: 5004
Number of extensions: 33424
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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