Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0616
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 85 3e-17
03_01_0547 + 4093196-4093657,4094267-4095148 85 3e-17
03_01_0544 + 4082528-4082989,4083585-4084466 85 3e-17
03_01_0543 + 4076981-4077442,4078145-4079026 85 3e-17
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 40 7e-04
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 40 7e-04
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 40 7e-04
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 37 0.009
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 31 0.60
01_06_0191 - 27334412-27335155 31 0.60
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 2.4
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 29 2.4
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 28 4.2
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 5.6
11_06_0383 + 22965599-22966090 27 9.7
09_04_0400 + 17296414-17296854,17299212-17299403 27 9.7
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 9.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
L+ PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 375 LEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
L+ PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 375 LEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
L+ PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 375 LEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
L+ PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 375 LEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 40.3 bits (90), Expect = 7e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
P+ + S A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 600 PRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 156
P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 624 PRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 156
P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 624 PRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 36.7 bits (81), Expect = 0.009
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 123
P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 379 PLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 206 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 30
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 29 DLMDFGLTC 3
L LTC
Sbjct: 326 ALSPIALTC 334
>01_06_0191 - 27334412-27335155
Length = 247
Score = 30.7 bits (66), Expect = 0.60
Identities = 27/93 (29%), Positives = 42/93 (45%)
Frame = -2
Query: 287 SVNEVSQLYEKCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKR 108
+VN + + E N+ S PL +S V LP +L + P A + TAK
Sbjct: 150 NVNVSTGVVEVTVTNALSAVKPLAVYSVDKVLLP----FELFGVKAPAAAPT--ASTAKP 203
Query: 107 PRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGL 9
+GG++ S G E + T AAS + +G+
Sbjct: 204 KKGGSTEAASGPAGAEDAEPTGAASARAVGWGV 236
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 374 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 294
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 278 EVSQLYEKCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTA 141
+V+ ++C +S +Y P AF + ++ PP A K+ A P A
Sbjct: 339 DVANGRQQCGCDSIAYCKPGSAFGSCSLSSPPAAPPKMAAASPPAA 384
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 266 LYEKCAVNSSSYFLPLVAFSAALVTLPPPA-SLKLTALMTPTATVCLMSRTAK-RPRGGN 93
LY S P A L +L PP + T+L+TP A L+S + R RG +
Sbjct: 26 LYHAATPPPPSSSSPRAAILRWLASLSPPCRAAAATSLLTPAAAAALLSMLRRLRARGHS 85
Query: 92 SW 87
S+
Sbjct: 86 SF 87
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 158 LMTPTATVCLMSRTAKRPRGGNSWKDST 75
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
>11_06_0383 + 22965599-22966090
Length = 163
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -2
Query: 302 PSKHLSVNEVSQLYE----KCAVNSSSYFLPLVAFSAALVTLPPPASLKLTA 159
P L+ +E + L+ C V S +PLV F A V++P ++L + +
Sbjct: 40 PQHGLTADEFTPLHRHKRCSCVVPSDHSLVPLVVFIAVRVSMPSSSALVIVS 91
>09_04_0400 + 17296414-17296854,17299212-17299403
Length = 210
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 242 SSSYFLPLVAFSAALVTLPPPASLKLTALMTP 147
SSS+ P ++FS+ PPP + + A+ P
Sbjct: 16 SSSFMAPRISFSSDFALEPPPPAQQQPAVRAP 47
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 20 PSSLEMQPLSTWYLPSLYV*SPSRNSH 100
PSS P S P YV SPSR+SH
Sbjct: 687 PSSPPRSPTSRGGRPVYYVQSPSRDSH 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,644,459
Number of Sequences: 37544
Number of extensions: 217792
Number of successful extensions: 673
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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