Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0616
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 84 4e-17
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 84 4e-17
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 84 4e-17
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 84 4e-17
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 79 1e-15
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 45 2e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 38 0.004
At4g27900.2 68417.m04005 expressed protein 32 0.22
At4g27900.1 68417.m04004 expressed protein 32 0.22
At2g31690.1 68415.m03868 lipase class 3 family protein similar t... 31 0.50
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 2.0
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 3.5
At3g49490.1 68416.m05409 expressed protein 27 4.7
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 4.7
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 27 6.2
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 27 8.2
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/56 (64%), Positives = 48/56 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 168
++ PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 375 IEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/56 (64%), Positives = 48/56 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 168
++ PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 375 IEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/56 (64%), Positives = 48/56 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 168
++ PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 375 IEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/56 (64%), Positives = 48/56 (85%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 168
++ PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 375 IEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 79.0 bits (186), Expect = 1e-15
Identities = 32/55 (58%), Positives = 46/55 (83%)
Frame = +1
Query: 1 LQVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
++ PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 41 IEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 45.2 bits (102), Expect = 2e-05
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 22 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 156
+K+G A + + + +C+E F +FP LGRF +R +T+AVG +
Sbjct: 478 VKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 10 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 165
+P+ + + +A++ + P+CVE+F E LGR +R +TVA+G + +
Sbjct: 612 SPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.22
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 105
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.22
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 13 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 105
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 484
Score = 30.7 bits (66), Expect = 0.50
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = -2
Query: 311 PFFPSKHLSVNEVSQLYEKCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 132
P+ S +S +L + +SSS P++ S + PPP + A
Sbjct: 27 PYTLSLPISYQNPKRLKTANSSSSSSLLAPVILNSPVASSSPPPIYCAPKFPCSSGAATV 86
Query: 131 LMSRTAKRPRGGNSWKD 81
+SR + +G N+WKD
Sbjct: 87 PLSRVWREIQGCNNWKD 103
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 335 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 433
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 335 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 433
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
>At3g49490.1 68416.m05409 expressed protein
Length = 953
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 177 LPEVDSLDDSDSNCLPHVTDSKTTEG 100
L +D + D+ + CL +TD+KTT G
Sbjct: 537 LENLDKVVDNLTKCLKKITDNKTTAG 562
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 281 NEVSQLYEKCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 132
N + + +SSS+ PL++ S++ T P P S A + PT +C
Sbjct: 98 NNLRPRSDSATTSSSSHSQPLLSSSSSSATSPAPTS---PANVLPTGNIC 144
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 27.1 bits (57), Expect = 6.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 389 HNISETFCYDCKLKCKF 439
+ ++ FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to
gi: 3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 287 SVNEVSQLYEKCAVNSSSYFLPLVAFSAAL 198
SV E+S L E C NS++ + LVA + ++
Sbjct: 227 SVEELSSLLEACKANSNTVSMKLVAGNTSM 256
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,480,180
Number of Sequences: 28952
Number of extensions: 174539
Number of successful extensions: 521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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