Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0615
         (725 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    26   1.4  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       26   1.4  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       26   1.4  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       26   1.4  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   3.2  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   7.3  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 371 FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 499
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 334 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 377


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 371 FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 499
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 104 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 147


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 371 FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 499
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 110 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 153


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 371 FDDAIAE-LDTLNEDSYKDSTLIMQLLRD-NLTLWTSDTQGDGDE 499
           FDD + + L++  EDS  D TLI + L D + ++  S  + DGD+
Sbjct: 104 FDDDVGDRLESEEEDS-TDETLIEEELTDTDSSMCDSTNEDDGDD 147


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 199 DILL*RIHRKHTKMLLKSAGENAAHTPHKAGSGV 300
           D+ +   +R  TKMLL+      AH+ H A S +
Sbjct: 466 DVAVLSNNRSMTKMLLQQGAIENAHSVHAANSNM 499


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 341 LANLISHNKRLRNLTPDPALWGVWA 267
           LAN  + N+  R  T +  ++GVWA
Sbjct: 16  LANEFNPNRGRRRPTKNQQIYGVWA 40


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,536
Number of Sequences: 2352
Number of extensions: 14196
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)