Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0614
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 67 1e-11
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 56 2e-08
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 38 0.008
09_04_0430 + 17502387-17503505 30 1.1
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 3.5
07_01_0156 + 1106058-1107596 28 4.6
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 28 6.1
05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438... 28 6.1
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 6.1
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 27 8.1
07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626... 27 8.1
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533... 27 8.1
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = +3
Query: 246 AEQRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVC 425
+ +VN E IVGW++TG V+ S++IH++YSRE + P+H+T+DT G ++AY+
Sbjct: 87 SHHKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYIS 146
Query: 426 VPLGVPNGKQGCMFTPVDVTLTCYE 500
L + + F + + L E
Sbjct: 147 SNLSLGDRHLAAQFQEIPLDLRMLE 171
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 43 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT-SDKGVVEVTNCFCVPHKEHADQVEAE 219
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 220 LNYAMDVYELNRESIPLKVLL 282
+ Y ++Y + + P +V++
Sbjct: 78 IEYHHNMYASHHKVNPKEVIV 98
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +1
Query: 46 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKE 195
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEE 67
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRE 258
V G LLG V+EVTNCF P +E ++ +A+ NY +++ RE
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLRE 104
>09_04_0430 + 17502387-17503505
Length = 372
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 573 AATPLDPRPPPDTVFWHTCRPTSQVH 496
AA P++P PP FW C +H
Sbjct: 216 AAPPIEPVAPPSPTFWTVCMSCCHIH 241
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 457 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 359
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>07_01_0156 + 1106058-1107596
Length = 512
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 180 RATQRTCRSSRSGT*LRDGCLRAEQRVNSSESIVGWWATGNEVTNHSSVI 329
R+TQRT R SR L+ + + R N+ + W+ V S++
Sbjct: 443 RSTQRTIRGSRKAKLLQQQGHKTQHRTNAISDFLNLWSAHAPVQLQGSIL 492
>08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 58 PVVLFQIVDAYERRNADSHRVIGTLLGTSD--KGVVEVTNC--FCVPHKEHADQVEAELN 225
P V+ + ++A+ER++ D V+G +L + K NC C+ E ++ EA
Sbjct: 963 PKVVVENLNAHERKDDDLRFVLGQMLQRNPCVKKFSVSINCENACL---EEVEKAEAAAR 1019
Query: 226 YAMDVYELNRESIPL 270
YA+D + NR ++ L
Sbjct: 1020 YAVD-FHANRPTLEL 1033
>05_06_0244 +
26643193-26643306,26643398-26643493,26643819-26643884,
26643965-26644024,26644108-26644164,26644464-26644593,
26645114-26645181,26645276-26645368,26645473-26645520,
26645882-26646019,26646738-26646833,26647979-26648050,
26648928-26648982,26649078-26649112,26649808-26649963
Length = 427
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 167 PTASACHTKNMPIKSKRNLITRWM-FTS*TESQFL*KYCWL 286
PT A H K P K + +W+ FTS + L Y W+
Sbjct: 53 PTIEASHLKRRPAVEKEKIAWQWLPFTSSARTDNLQLYHWV 93
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 137 ARATKEWWK*PTASACHTKN-MPIKSK 214
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 276 IVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 389
++GW++TG++V + IH+ PV++ L+ ++
Sbjct: 120 VLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAI 157
>07_01_0795 -
6257985-6258149,6258276-6258380,6259196-6259328,
6260225-6260289,6260569-6261642,6262328-6262433,
6262872-6263044,6263352-6263765
Length = 744
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +1
Query: 217 ELNYAMDVYELNRESIPLKVLLVGGRLAMK*PTTPLLYTSIIPVNAVSLSMLLWTLRWLE 396
EL +M + +++ +L+ G K + + ++ S LWT+RWLE
Sbjct: 539 ELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLWTIRWLE 598
>01_06_1089 -
34451982-34452670,34452755-34452814,34453287-34453352,
34454055-34454253,34454470-34454719,34454830-34454898,
34455733-34455804,34456027-34456168,34456544-34457064,
34457166-34457739,34459164-34459269
Length = 915
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 334 SIIPVNAVSLSMLLWTLRWLEVEWVYVHMFVYHWECQMESKVACSL 471
S P VSL ++W + ++E W Y H + + +S+ SL
Sbjct: 627 SQFPYQFVSLFSVIWLISYIENVWTYGHRYRELRSSKQDSRYDSSL 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,135
Number of Sequences: 37544
Number of extensions: 422414
Number of successful extensions: 1101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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