Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0614
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   8e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                  31   0.51 
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)                       30   1.6  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             29   2.7  
SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)          29   2.7  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   29   3.6  
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)                  28   4.8  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   28   4.8  
SB_26112| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = +1

Query: 43  SVKVHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE 195
           +V VHP+VL  +VD + R        RV+G LLG+  KGV++V NCF VP  E
Sbjct: 10  TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDE 62


>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 46  VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAEL 222
           V+V  + + +I+   E   +    V G LLG      +E+TNCF  P +K   D+ + ++
Sbjct: 18  VQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDV 77

Query: 223 NYAMDV 240
           NY M+V
Sbjct: 78  NYQMEV 83


>SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 931

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 61  VVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNC---FCVPHKEHADQVEAELNYA 231
           +++F +V    R+    H   G++ G    G   +  C     +    + D +EA ++ A
Sbjct: 505 IIIFVVVSVRRRKKYTKH-ANGSMHGFEMDGSTVLPTCGQRMYIDPSNYGDPMEALMSVA 563

Query: 232 MDVYELNRESIPLKVLLVGGRLA 300
           M   E+N++ + L++++ GG  A
Sbjct: 564 M---EINKDDLKLEIIIGGGEFA 583


>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
          Length = 396

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 21  IKNGSQY*CEGPSCCFISNCGRIRTSKCRFSQ 116
           ++N + Y C G + C I    R R   CRF +
Sbjct: 85  VRNNTNYTCRGQNTCAIDRNSRSRCPSCRFQK 116


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 39  Y*CEGPSCCFISNCGRIRTSKCRF 110
           Y C G + CFI    R R  KCRF
Sbjct: 76  YTCRGSNDCFIDKVHRNRCQKCRF 99


>SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)
          Length = 679

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +1

Query: 61  VVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNC---FCVPHKEHADQVEAELNYA 231
           +++F +V    R+    H   G++ G    G   +  C     +    + D +EA ++ A
Sbjct: 528 IIIFVVVSVRRRKKYTKH-ANGSMHGFEMDGSTVLPTCGQRMYIDPSNYGDPMEALMSVA 586

Query: 232 MDVYELNRESIPLKVLLVGGRLA 300
               E+N++ + L++++ GG  A
Sbjct: 587 K---EINKDDLKLEIIIGGGEFA 606


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 555 PRPPPDTVFWHTCRPTSQVHSM*E*HLQE*TCNLAFHLALPMV 427
           P PPP +VF   C P     S    HLQ    N   +L L +V
Sbjct: 45  PAPPPSSVFTAACPPRYTNPSPHSLHLQSFIVNATTNLTLTLV 87


>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
          Length = 270

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 371 YSGHFAGWRSNGFTCICL 424
           ++GH   W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 362 CPCYSGHFAGWRSNGFTCIC 421
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 362 CPCYSGHFAGWRSNGFTCIC 421
           CPC +G     + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 253 CSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHFDVRMRPQF 74
           CS  + PSR  +P R  R +   +R+  W++   +CR  P R   L   ++F    R  F
Sbjct: 44  CSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINFGRLRRRYF 100

Query: 73  EIK 65
           + K
Sbjct: 101 DSK 103


>SB_26112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 530 SGTLVDLHLRFIACESDIYRSEHATLLSIWHSQ 432
           +G L+D H+R    E DIY ++ + LL+  +SQ
Sbjct: 172 NGWLIDEHIREAEAEYDIYAAKTSILLNYLNSQ 204


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 253 CSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHFD-VRMRP 80
           CS  + PSR  +P R  R +   +R+  W++   +CR+ P R   L   ++F  +R RP
Sbjct: 98  CSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINFGRLRRRP 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,905
Number of Sequences: 59808
Number of extensions: 489483
Number of successful extensions: 1803
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)