Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0614
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 69 2e-12
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 58 4e-09
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 56 2e-08
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 38 0.004
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 29 2.2
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 29 2.2
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 29 2.2
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 29 2.2
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 28 3.9
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 28 5.1
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 27 6.8
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 27 6.8
At3g56320.1 68416.m06261 nucleotidyltransferase family protein c... 27 6.8
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 27 9.0
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 27 9.0
At2g28110.1 68415.m03415 exostosin family protein contains 1 tra... 27 9.0
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/89 (35%), Positives = 52/89 (58%)
Frame = +3
Query: 240 LRAEQRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAY 419
L + +VNS E+IVGW++TG V SS+IH++Y+RE P+H+T+DT G ++A+
Sbjct: 94 LASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAF 153
Query: 420 VCVPLGVPNGKQGCMFTPVDVTLTCYEPE 506
V L + + + F + V L + E
Sbjct: 154 VSSNLSLGDRQLVAHFQEIPVDLRMVDAE 182
Score = 63.7 bits (148), Expect = 8e-11
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +1
Query: 40 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT-SDKGVVEVTNCFCVPHKEHADQVEA 216
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 217 ELNY 228
+++Y
Sbjct: 86 DIDY 89
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 46 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKE 195
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEE 67
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 QRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVP 431
+R+N+ E +VGW++TG ++ + +H ++ PV V +D + +AY V
Sbjct: 90 KRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVE 149
Query: 432 LGVPNGKQGC--MFTPVDVTLTCYEPE 506
N Q +F V + +E E
Sbjct: 150 EVKENATQKSQKVFVHVSTEIAAHEVE 176
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +1
Query: 46 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKE 195
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEE 67
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 QRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVP 431
+R+N+ E IVGW++TG ++ + +H ++ PV V +D + +AY V
Sbjct: 90 KRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVE 149
Query: 432 LGVPNGKQGC--MFTPVDVTLTCYEPE 506
N Q +F V + +E E
Sbjct: 150 EVKENATQKSQQVFVHVPTEIAAHEVE 176
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRE 258
V G LLG V+EVTNCF P ++ +++EA+ NY +++ RE
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLRE 94
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 276 IVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 389
++GW++TG++ T IH+ PV+V L+ ++
Sbjct: 109 VLGWYSTGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 328 YTSIIPVNAVSLSMLL 375
YT+++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 328 YTSIIPVNAVSLSMLL 375
YT+++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 328 YTSIIPVNAVSLSMLL 375
YT+++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 383 FAGWRSNGFTCI-CLCTIGSAKWKARL 460
FAG+RS + CLC +G A W RL
Sbjct: 332 FAGYRSEIVRSVFCLCPLGWAPWSPRL 358
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 319 PLLYTSIIPVNAVSLSMLLWTLRWLEVEWVYVHM 420
P+L ++ NA+ L+ + TL+W V WV+V +
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFVEL 367
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 255 SVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 157
+V L+ IH+ I F F ++FVW +A+G H
Sbjct: 240 AVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 255 SVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 157
+V L+ IH+ I F F ++FVW +A+G H
Sbjct: 320 AVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At3g56320.1 68416.m06261 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 603
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 532 LLAHL*TYISGS*HVRVTSTGVNMQPCFPF-GTPNGTQ 422
++ HL TY H+R + +MQP FP PNG Q
Sbjct: 439 IVRHLVTYRKNEFHLRSLNVSTSMQP-FPLHSLPNGCQ 475
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 276 IVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 389
I+GW++TG++ IH+ PV+V L+ ++
Sbjct: 109 ILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAI 146
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 328 YTSIIPVNAVSLSMLL 375
YT+++PVNAV++S LL
Sbjct: 258 YTTVVPVNAVAMSPLL 273
>At2g28110.1 68415.m03415 exostosin family protein contains 1
transmembrane domain; similar to
pectin-glucuronyltransferase (GI:23821292) [Nicotiana
plumbaginifolia]; similar to NpGUT1 homolog
(GI:23821294) [Arabidopsis thaliana]; contains Pfam
profile PF03016: Exostosin family
Length = 448
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 383 FAGWRSN-GFTCICLCTIGSAKWKARL 460
FAG++S + CLC +G A W RL
Sbjct: 318 FAGYQSEIARSVFCLCPLGWAPWSPRL 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,663
Number of Sequences: 28952
Number of extensions: 324697
Number of successful extensions: 827
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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