Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0613
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   3.0  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   3.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   4.0  

>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +2

Query: 497 WSL*CDPKQALSLCAQEGSNGKLVAHNVCSHYHMCVTVKHYHSLVRLIFSMILKRNDAIF 676
           ++L C    +  +C Q  S+           Y+       + ++V LIF+ +L +N  + 
Sbjct: 528 FTLACKCVDSAIVCVQNLSHLSKGLKRTLDRYYWTTVYCGFSTIVTLIFAALLTKNTNLL 587

Query: 677 LLMSAAK----AVLHQC 715
           + +S A+    A+ H+C
Sbjct: 588 IHISVARESIEALAHEC 604


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 731 LSGGRNTGATRPSQLTLAGKSHRS 660
           LSG RNT A+RP+ L  AG S  S
Sbjct: 554 LSGARNTAASRPTNLA-AGNSSAS 576


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 696 FAADISRKIASFLLRIIEKIRRTSE 622
           F  DISR+IASFL   + + R  +E
Sbjct: 574 FGRDISRRIASFLSDYLSRAREVNE 598


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 294  CDLLEKRIRRVLVAHEDCDKFYMCSSGNPVTLK 392
            CD+++ ++R +  A E  + FY  + GN  T K
Sbjct: 1063 CDMMDAQVRDLANAAESQESFYSKARGNDSTSK 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,612
Number of Sequences: 5004
Number of extensions: 66273
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)