Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0613
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    32   0.44 
01_02_0133 - 11457363-11457561,11458239-11458469,11460117-11461108     31   1.3  
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266...    30   1.8  
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173...    29   3.1  
03_06_0726 - 35761959-35762063,35762232-35762336,35762543-357626...    29   5.4  
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    28   9.5  
06_01_0077 + 626126-626137,626222-627421                               28   9.5  

>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
            27327274-27327333,27327843-27327962,27328842-27329114,
            27329186-27329257,27329798-27329860,27329957-27330139,
            27330544-27330660,27330734-27332683,27332770-27332907,
            27333003-27333284,27334650-27335522
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360  MCSSG-NPVTLKCPSNLFFSPITQTCEWSKNVECGTRVVPGE 482
            M ++G N  +L+ PS++  SP  +T   SK+V CG+ V+ G+
Sbjct: 889  MTANGMNSESLQSPSSMQDSPEDKTISVSKSVSCGSEVIKGD 930


>01_02_0133 - 11457363-11457561,11458239-11458469,11460117-11461108
          Length = 473

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = -2

Query: 595 VIVATHIMGYKFAVRTFLST*R*CLFRITLQGPVLTFSSPGTTLVPHSTFLDHSQVWVIG 416
           V+    I  + FA+ T +ST   C F  T +G V   S PG  L+     L  + ++ + 
Sbjct: 159 VVAGKGISAHTFAIFTVVSTFANCGFVPTNEGMVSFRSFPGLLLLVMPHVLLGNTLFPVF 218

Query: 415 LKNKFEGHLRVTGFPD 368
           L+       RVTG+P+
Sbjct: 219 LRLAIAALERVTGWPE 234


>03_01_0337 +
           2664648-2664670,2664752-2664838,2664930-2665095,
           2665817-2665891,2666931-2667038
          Length = 152

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 288 NSCDLLEKRIRRVLVAHEDCDKFYMCSSGNPVTLKCPSN 404
           N C LLE  +  V++A   C + Y  S G+ V  KCPS+
Sbjct: 5   NLCRLLE--LGAVVLAERSCLQKYQFSHGDVVLFKCPSD 41


>03_01_0219 +
           1731267-1731728,1732148-1732235,1732330-1732417,
           1732528-1732573,1732687-1732785,1734363-1734431,
           1735706-1736036,1736123-1736256,1736400-1737251
          Length = 722

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 664 RCDFPANVSCEGRVAPVFLPPLNKHLEARQ 753
           +C+  ANVSC+G  +    PPL +H  +R+
Sbjct: 568 KCENGANVSCDGVGSTGQTPPLQQHSHSRE 597


>03_06_0726 -
           35761959-35762063,35762232-35762336,35762543-35762665,
           35763056-35763316,35763449-35763905,35764637-35764755,
           35764851-35764919
          Length = 412

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 236 DRKLQGATVTETTKTKIQQL*SARKK--NPKSFSGSR 340
           D   Q  T T  TKT+IQ+   ARKK  N K+ S S+
Sbjct: 287 DNGFQKKTSTAATKTQIQETDEARKKFSNAKAISSSQ 323


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 366 SSGNPVTLKCPSNLFFSPITQ-TCEWSKNVECGTRVVPGEENVN 494
           + G   TLK    L   P+ + T  W +N     RVVP ++N+N
Sbjct: 426 AKGGAETLKFNMALILLPVCRNTVTWIRNRAAVARVVPFDDNLN 469


>06_01_0077 + 626126-626137,626222-627421
          Length = 403

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 113 ENCNQFYTCSNAIPVTLTCP-STLLYNLLTEKCDWP 217
           ENC++FY C   +   +T P S L+ +  +   DWP
Sbjct: 171 ENCDEFYYC-GILTAPITSPNSHLIISTQSSLFDWP 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,992,317
Number of Sequences: 37544
Number of extensions: 409020
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)