Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0613
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    29   2.6  
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont...    28   6.0  
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H...    28   7.9  
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    28   7.9  
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa...    28   7.9  

>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 598 VRHGKTLSLACPS----NLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKH 738
           +   + +  ACPS      FY+  +  CDF  +V C  R++   L P + H
Sbjct: 247 INSDRDICSACPSLCIAGFFYECSERNCDFRLHVQC-ARISEPLLHPSHMH 296


>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
           contains weak similarity to cytoplasmic linker protein
           CLIP-170 (GI:2905649) [Gallus gallus]
          Length = 588

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 113 ENCNQFYTCSNAIPVTLTCPSTLLYNLLTEKCDWPRYVDCGDRKLQGATVTETTKTKIQ 289
           E+ NQF   S A+        +L++  ++++CDW      G+R    A   E  + K+Q
Sbjct: 147 ESQNQFVETS-ALEEETDKTGSLVFQSVSQECDWEFSATAGERAGLAAVAHEIRQLKLQ 204


>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
           (HSP22.0-ER) identical to endomembrane-localized small
           heat shock protein GI:511795 from [Arabidopsis thaliana]
          Length = 195

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 385 LLNVLRTYSLAQ-SPKLVNGPRMSNVALESFQVRKTS 492
           L N + T +L + SP+ V GPR+ N+A E  Q  K S
Sbjct: 152 LENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKIS 188


>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +1

Query: 628 CPSNLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKHL 741
           C S  FY   K  CDF  +V C     P+  P    HL
Sbjct: 695 CISGFFYKCSKIDCDFRLHVQCATISEPLLHPSHMHHL 732


>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 872

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +2

Query: 23  NDVNNNTNTSPSEVKAICARGNSEGTFIPHENCNQFYTCSNAIPVTL-TCP 172
           ND  N+   S   + AIC     +  F+P  +C   Y C   I  T   CP
Sbjct: 807 NDCCNDVEASNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCP 857


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,561,843
Number of Sequences: 28952
Number of extensions: 348400
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)