Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0612
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6L8U0 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  
UniRef50_A6DZR8 Cluster: 5'-nucleotidase; n=1; Roseovarius sp. T...    33   8.0  

>UniRef50_A6L8U0 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides distasonis ATCC 8503|Rep: Putative
           uncharacterized protein - Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 173

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 656 IVSLCRFTNAGRGSL*VNFRFLSARQSNLDGKQFGFIRIHLMELIILYCNNS 501
           I+S C +   GRG L +   FL+AR S+ D      +  +L   + L+C NS
Sbjct: 71  IISSCEWITQGRGVLLLEKIFLAARSSSSDISMSSILLRYLSTKLSLHCCNS 122


>UniRef50_A6DZR8 Cluster: 5'-nucleotidase; n=1; Roseovarius sp.
           TM1035|Rep: 5'-nucleotidase - Roseovarius sp. TM1035
          Length = 551

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 101 GGYILDPSNSPIPMDTESVHPSRKRQTPPNSD 6
           G ++L PS  P+P +TE+  P+   +TP +S+
Sbjct: 100 GAFVLIPSELPVPPNTETGEPNTNEETPIDSE 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,517,552
Number of Sequences: 1657284
Number of extensions: 11743104
Number of successful extensions: 30425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30393
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)