Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0612
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   7.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.7  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 320 IYLFVFGLWLSDRSKCFGYLY 258
           I+L   GLWL DRSK  G LY
Sbjct: 285 IFLTAIGLWLYDRSK-KGNLY 304


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 356  TYIIS*KINNEHIYLFVFGLWLSDRSK 276
            TY+I  + N E++Y+  + LW+   S+
Sbjct: 1084 TYVIFFEPNTENVYINSYNLWVDQSSQ 1110


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 554 QTVYHPNSIVGQIENENSLIVNLGLHL*NGKDS 652
           Q + HP SI+G     N+LI N+ +     +DS
Sbjct: 83  QVIGHPISIIGSNYERNALIFNMCMIFHEEEDS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,898
Number of Sequences: 5004
Number of extensions: 53943
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)