Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0612
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853...    30   1.9  
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879...    30   1.9  
03_06_0306 + 33019798-33020025,33020163-33020258,33020357-330204...    28   5.7  
05_03_0124 - 8685262-8685362,8685765-8686459,8686614-8686789,868...    28   7.6  

>07_03_0108 +
           13481249-13481464,13484556-13484693,13485320-13485388,
           13485462-13485599,13485685-13485802,13486265-13486347,
           13486921-13487013,13487801-13487969,13488056-13488129,
           13488448-13488633,13490009-13490101,13490469-13490534,
           13490618-13490785,13491199-13491319,13492072-13492141,
           13492389-13492476,13492565-13492685,13492964-13493157,
           13493239-13493347,13493488-13493643,13493858-13493957,
           13494115-13494288,13494549-13494694,13494796-13494860,
           13495013-13495018
          Length = 986

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 115 PPIPGEVISLTHLTLQSQWTRS 50
           P I G +IS+THL   SQW  S
Sbjct: 809 PQIGGRIISMTHLPSDSQWLHS 830


>01_01_1111 -
           8791925-8792649,8793506-8793890,8794341-8794618,
           8794998-8795163
          Length = 517

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 475 HVLAGKLHGELLQYKIMSSIK*IRMKPNCLPSKFD 579
           H L  K+HG+ ++Y+I+  +   + +P  LP+K D
Sbjct: 25  HYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCD 59


>03_06_0306 +
           33019798-33020025,33020163-33020258,33020357-33020428,
           33021274-33021339,33021699-33021764,33021852-33021926,
           33023117-33023188,33024501-33024600,33024730-33024746,
           33025558-33025650
          Length = 294

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 131 MNGVDPPDPGGGYILDPSNSPIPMDTESVHPSRKRQ 24
           + G+ PP  GGG +  P+  P P  T+  HP + +Q
Sbjct: 83  LTGLFPPVFGGGGVQPPNLRPTP-PTQVFHPQQSKQ 117


>05_03_0124 -
           8685262-8685362,8685765-8686459,8686614-8686789,
           8686939-8686982,8687096-8687102
          Length = 340

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 101 GGYILDPSNSPIPMDTESVH 42
           GG ILDPS   IP+D   VH
Sbjct: 43  GGIILDPSMMVIPIDDHMVH 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,091
Number of Sequences: 37544
Number of extensions: 293976
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)