Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0612
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051430-1|AAK92854.1|  724|Drosophila melanogaster GH10595p pro...    30   2.4  
AE013599-2121|AAF58100.2|  724|Drosophila melanogaster CG8256-PC...    30   2.4  
AE013599-2120|AAF58099.2|  724|Drosophila melanogaster CG8256-PB...    30   2.4  
AE013599-2119|AAG22263.1|  724|Drosophila melanogaster CG8256-PA...    30   2.4  
AF492764-1|AAM11673.1|  417|Drosophila melanogaster gag protein ...    28   9.8  

>AY051430-1|AAK92854.1|  724|Drosophila melanogaster GH10595p
           protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 95  YILDPSNSPIPMDTESVHPSRKRQTPPNSD 6
           Y LD  N+P  ++  +V P RKR  PP +D
Sbjct: 24  YTLDRWNTPHVVNNATVPPKRKRTLPPRAD 53


>AE013599-2121|AAF58100.2|  724|Drosophila melanogaster CG8256-PC,
           isoform C protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 95  YILDPSNSPIPMDTESVHPSRKRQTPPNSD 6
           Y LD  N+P  ++  +V P RKR  PP +D
Sbjct: 24  YTLDRWNTPHVVNNATVPPKRKRTLPPRAD 53


>AE013599-2120|AAF58099.2|  724|Drosophila melanogaster CG8256-PB,
           isoform B protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 95  YILDPSNSPIPMDTESVHPSRKRQTPPNSD 6
           Y LD  N+P  ++  +V P RKR  PP +D
Sbjct: 24  YTLDRWNTPHVVNNATVPPKRKRTLPPRAD 53


>AE013599-2119|AAG22263.1|  724|Drosophila melanogaster CG8256-PA,
           isoform A protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 95  YILDPSNSPIPMDTESVHPSRKRQTPPNSD 6
           Y LD  N+P  ++  +V P RKR  PP +D
Sbjct: 24  YTLDRWNTPHVVNNATVPPKRKRTLPPRAD 53


>AF492764-1|AAM11673.1|  417|Drosophila melanogaster gag protein
           protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 95  YILDPSNSPIPMDTESVHPSRKRQTPPNSD 6
           YI DP+  P   D ++   +++ QT PN D
Sbjct: 367 YIPDPTQIPFEQDHDTSDKTQQEQTAPNDD 396


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,887,449
Number of Sequences: 53049
Number of extensions: 530711
Number of successful extensions: 1301
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)