Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0612
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    25   0.85 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.9  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 541 IRMKPNCLPSKFDCRADRKRKFTHSE 618
           + M+P C+  ++ C   RK K    E
Sbjct: 47  VGMRPECMVPEYQCAVKRKEKKAQKE 72


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 541 IRMKPNCLPSKFDCRADRKRKFTHSE 618
           + M+P C+  ++ C   RK +    E
Sbjct: 250 VGMRPECVVPEYQCAVKRKEEKAQKE 275


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 116 PPDPGGGYILDPS 78
           PP+ G G IL PS
Sbjct: 356 PPNDGNGNILSPS 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,132
Number of Sequences: 438
Number of extensions: 3804
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)