Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0612
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05160.1 68418.m00549 leucine-rich repeat transmembrane prote...    29   2.1  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   3.6  

>At5g05160.1 68418.m00549 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 640

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 101 GGYILDPSNSPIPMDTESVHPSRKRQT 21
           GG I   SN P P+ TE++HP R+RQ+
Sbjct: 238 GGAISPSSNLPRPL-TENLHPVRRRQS 263


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 104 GGGYILDPSNSPIPMDTESVH-PSRKRQTP-PNSDY 3
           GG     PS SP P+ T  VH P   +++P PN  Y
Sbjct: 387 GGSSQATPSKSPSPVPTRPVHKPQPPKESPQPNDPY 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,876
Number of Sequences: 28952
Number of extensions: 258712
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)