Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0611
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    91   6e-20
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   7.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 91.5 bits (217), Expect = 6e-20
 Identities = 47/87 (54%), Positives = 54/87 (62%)
 Frame = +2

Query: 2   TGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQ 181
           TGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQ
Sbjct: 361 TGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQ 419

Query: 182 FFTIFIGVNITFFPQHFLGLAGIPHDI 262
           F+ +FIGVNI F PQHFLGL G+P  I
Sbjct: 420 FWILFIGVNIVFGPQHFLGLNGMPRRI 446


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 133 SFIYRPFIKFLYTKNSIFYNIYWS-KYNIFSTTFFRFSWNTSRYSDY 270
           S++Y+PFIK  ++ N   + I  S      S       WN +  S+Y
Sbjct: 11  SYLYQPFIKAYFSLNMAIFEINNSFLICAVSIALNPLLWNIAARSEY 57


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +2

Query: 8   VILANSSIDITLHDTYYVV 64
           ++LAN+++D T+H  Y+++
Sbjct: 660 ILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,260
Number of Sequences: 5004
Number of extensions: 25176
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)