Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0611
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  103   6e-23
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   4.6  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  103 bits (248), Expect = 6e-23
 Identities = 50/84 (59%), Positives = 56/84 (66%)
 Frame = +2

Query: 2   TGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQ 181
           TGVILANSS+D+ +HDTYYVVAHFHYVLS              +   TG   N    KI 
Sbjct: 58  TGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIH 117

Query: 182 FFTIFIGVNITFFPQHFLGLAGIP 253
           F+ +FIGVNITFFPQHFLGLAG P
Sbjct: 118 FWIMFIGVNITFFPQHFLGLAGFP 141



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/37 (67%), Positives = 27/37 (72%)
 Frame = +2

Query: 143 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIP 253
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG P
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFP 55



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 130 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNTSR 258
           + FIY   + FL +KN  F+  YW+   YN F        W T R
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRTQR 58


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 412 SIE*YQNLPPAEHSYNELPIL 474
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 401 ISHHQLNDIKIYHQQNIHIMNYQF 472
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,901,462
Number of Sequences: 59808
Number of extensions: 148189
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)