Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0611
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 404 SHHQLNDIKIYHQQNIHIM 460
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 266 SEYREVFQLNLKNV 225
           S+  E FQL+LKN+
Sbjct: 126 SDQHEWFQLSLKNI 139


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 266 SEYREVFQLNLKNV 225
           S+  E FQL+LKN+
Sbjct: 126 SDQHEWFQLSLKNI 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,366
Number of Sequences: 438
Number of extensions: 1965
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)