Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0609
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.85 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.0  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   2.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 235 LCCTFEFTYSRIFYAD*LKQYSQTFLAPALHYFLNIFFQLLTVFFYY 95
           L C+  FT   +FY   +  ++  FL    +YF   F  LL V+++Y
Sbjct: 73  LLCSGYFTVHLLFYCPFII-FTVHFLL-CTYYFYYAFIILLCVYYFY 117



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 235 LCCTFEFTYSRIFYAD*LKQYSQTFLAPALHYFLNIFFQLLTVFFYY 95
           L C + F Y+ I +   L      FL   ++YF+   F LL ++++Y
Sbjct: 110 LLCVYYFYYAFIIFTVHL-----LFLL-CIYYFVVPLFFLLCIYYFY 150


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 77  YTVHLIVIGYHRTRTSAMPGAESS 6
           YT+H+   G+H   T  M G E S
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVECS 509


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 664 TEPHGSPSSGPYDLVV 617
           T P G P +GP DL V
Sbjct: 231 TPPSGEPGNGPLDLSV 246


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 205 RIFYAD*LKQYSQTFLAPALHYFLNIFFQLLTVFFY 98
           RIFY D        ++   L YF++  +Q+L   F+
Sbjct: 40  RIFYQDESPISRLVYIGTDLSYFISNVYQILAYNFW 75


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 364 LPHP*THWTPSLVISVAASSGYRSMVTTEPPVIRC 260
           L HP   W P    S+  SS  ++   T PP++RC
Sbjct: 76  LGHP--QW-PFAWGSLXRSSSPQTSAPTGPPIVRC 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,908
Number of Sequences: 336
Number of extensions: 4157
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)