Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0609
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0290 - 15824108-15824387,15824457-15824635,15825186-158253...    29   2.9  
08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394...    29   2.9  
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856     29   3.9  
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378...    29   5.1  
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           28   9.0  
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380...    28   9.0  
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313...    28   9.0  

>11_04_0290 -
           15824108-15824387,15824457-15824635,15825186-15825327,
           15825646-15825683
          Length = 212

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 155 CQKRL*ILF*SIGIENSRICKFKCATKCFRLYQQSAANYWRL 280
           C K + ILF ++   NSRIC  K A    R+     A +WRL
Sbjct: 23  CSKNVEILFNALYQTNSRICA-KAALVQNRIVMDHIAEHWRL 63


>08_01_0445 +
           3942820-3943030,3943719-3943853,3943942-3944150,
           3944258-3944464
          Length = 253

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
 Frame = +2

Query: 389 PNCSSLFIRCDAC*SWFIIRQQWRQGPSSE-----PIHYAP*LRGVTFESDLAILHVSTQ 553
           P+    F+R DAC  WF +   WR G  +        H      GV F  +   L V  +
Sbjct: 147 PDIRLWFVRLDACYPWFPVVLDWRAGELARYAAMLAPHQMSMRLGVVFNPEALELFVMKK 206

Query: 554 IAYVNNAVRPARIAGPNYNVAD 619
           +  V + ++      P    AD
Sbjct: 207 VFIVYSWLKQQEHPKPGLKTAD 228


>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
          Length = 1002

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 695 ERDEVVLNDXYGATWIPIQWPIRPGCLQHCNWGQQSWLVSRR 570
           ERD   L +  GA  +  +WP       HC+W   +   SRR
Sbjct: 33  ERDRSALLELRGAAGLLGRWPTGSAVADHCSWPGVTCDASRR 74


>02_01_0522 +
           3779404-3779439,3779594-3779709,3780120-3780327,
           3781446-3781611,3781713-3781842,3782496-3782619,
           3782794-3782844,3783140-3783262,3783504-3783602,
           3783680-3783790,3783868-3783957,3784035-3784175,
           3787913-3788116,3788154-3788290,3788429-3788662,
           3789535-3789829,3789963-3790017,3790144-3790245,
           3790581-3790669,3790807-3790899
          Length = 867

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 84  RRVYGPPDCDWLPSHTDV 31
           RRV G  DC W P HTD+
Sbjct: 849 RRVEGIHDCKWDPLHTDI 866


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 641 QWPIRP--GCLQHCNWGQQSWLVS 576
           QW ++P   CLQH  WG Q  ++S
Sbjct: 385 QWVVKPLTNCLQHPVWGSQGGVLS 408


>11_06_0334 +
           22437187-22437322,22437430-22437515,22437927-22438073,
           22438166-22438274,22439510-22439633,22439727-22439752,
           22439774-22440000,22440084-22440185
          Length = 318

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 529 CHLTCFNSNRLRQQRRETSQDCWPQLQCCRQPG 627
           C +TC++    R+ R + +Q C     CC QPG
Sbjct: 173 CFITCYD----RRVRNDLAQPCRELCLCCCQPG 201


>01_01_0417 -
           3135502-3135672,3135759-3135947,3136037-3136154,
           3136398-3137048,3137146-3137309,3138598-3139098
          Length = 597

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 542 VSTQIAYVNNAVRPARIAGPNYNVA 616
           V T  A++N AV+P  + GP   VA
Sbjct: 233 VETAAAFLNKAVKPVLVGGPKMRVA 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,102,451
Number of Sequences: 37544
Number of extensions: 439291
Number of successful extensions: 988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)