Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0609
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10500.1 68416.m01260 no apical meristem (NAM) family protein...    28   5.7  
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast...    28   7.5  
At5g13400.1 68418.m01543 proton-dependent oligopeptide transport...    27   9.9  
At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine...    27   9.9  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    27   9.9  

>At3g10500.1 68416.m01260 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 549

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 655 HGSPSSGPYDLVVCNIVIGASNPGWSHGVVDVSDL 551
           H + SSG   +    I I  SN GWS+G  +  DL
Sbjct: 467 HAAQSSGSVHVTAGMITISDSNMGWSYGKNENLDL 501


>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
           transaminase A (ASP3) (YLS4) identical to SP|P46644
           Aspartate aminotransferase, chloroplast precursor (EC
           2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
           identical to cDNA YLS4 mRNA for aspartate
           aminotransferase (ASP3), partial cds GI:13122285
          Length = 449

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 366 SILNNRAVLTAAHCLFGVMRVRVGSSFGNSGGRVHQVSRYITHPNY 503
           +I  NR  +T   CL G   +RVG  F       HQ + YIT P +
Sbjct: 137 AIRENR--ITTVECLSGTGSLRVGGEF--LAKHYHQKTIYITQPTW 178


>At5g13400.1 68418.m01543 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 624

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 344 VGSRMRQFYPQQQSCPNCSSLFIRCDAC*SW 436
           +G+ ++ F P Q +C   S L   C+   SW
Sbjct: 155 LGASLKMFVPDQSNCGQLSLLLGNCEEAKSW 185


>At4g29580.1 68417.m04217 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesB [Arabidopsis thaliana] GI:4836444, cytidine
           deaminase 9 (CDA9) [Arabidopsis thaliana] GI:5080715;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 298

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 471 DGPCRHCCRMMNQL*HAS 418
           D PC HCC+++ ++ +AS
Sbjct: 106 DPPCPHCCQLLQEIRNAS 123


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 350 SRMRQFYPQQQSCPNCSSLF-IRCD 421
           S   +F+ ++Q+CPN  SLF + CD
Sbjct: 433 SECAKFFMRKQTCPNSKSLFTVPCD 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,896
Number of Sequences: 28952
Number of extensions: 336050
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)