Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0608
         (519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   2.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   2.8  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   2.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   2.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   2.8  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   2.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.0  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   6.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 207 SQVQQDGGEHQRWRQNHPQSWYRRSQRL 124
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 382 HLHGSYNMNNLNNDVAIINHNH 447
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 439 HNHVGFNNNIQRINLASGN 495
           HNH  +N+N+       GN
Sbjct: 65  HNHQNYNSNVLSNGYGYGN 83


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 382 HLHGSYNMNNLNNDVAIINHNH 447
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 439 HNHVGFNNNIQRINLASGN 495
           HNH  +N+N+       GN
Sbjct: 65  HNHQNYNSNVLSNGYGYGN 83


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 309 SLGVPGSPSVIRGHG 265
           SL VPG+P ++  HG
Sbjct: 143 SLQVPGAPMMMSSHG 157


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 244 FLTDNTRSVTADH*WRTRNAQARQFT 321
           F+    R+ T D  WR R   A +FT
Sbjct: 245 FVMPTVRNCTGDTSWRVRYMVADKFT 270


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 382 HLHGSYNMNNLNNDVAIINHNH 447
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 439 HNHVGFNNNIQRINLASGN 495
           HNH  +N+N+       GN
Sbjct: 65  HNHQNYNSNVLSNGYGYGN 83


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 382 HLHGSYNMNNLNNDVAIINHNH 447
           H H +YN N L+N     N+ H
Sbjct: 65  HNHQNYNSNVLSNGYGYGNYYH 86



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 439 HNHVGFNNNIQRINLASGN 495
           HNH  +N+N+       GN
Sbjct: 65  HNHQNYNSNVLSNGYGYGN 83


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 453 LQQQHPAHQPSQWKQQ 500
           +Q+QHP H     +QQ
Sbjct: 171 MQEQHPQHHQPHHQQQ 186


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 453 LQQQHPAHQPSQWKQQ 500
           +Q+QHP H     +QQ
Sbjct: 173 MQEQHPQHHQPHHQQQ 188


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -2

Query: 227 SAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLSPGDTDLVVVVKFDGL 54
           SA++E   K+  + V  SVGG T      V  +      K ++    +      +DGL
Sbjct: 86  SALKE---KNPNLKVMLSVGGATASPDSFVAAANDPEKMKNMTSSAIEFFETYNYDGL 140


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 415 NNDVAIINHNHVGFNNN 465
           NN+     +N+  FNNN
Sbjct: 128 NNNTPSATNNNTNFNNN 144


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 415 NNDVAIINHNHVGFNNN 465
           NN+     +N+  FNNN
Sbjct: 76  NNNTPSATNNNTNFNNN 92


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 415 NNDVAIINHNHVGFNNN 465
           NN+     +N+  FNNN
Sbjct: 259 NNNTPSATNNNTNFNNN 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,406
Number of Sequences: 336
Number of extensions: 2292
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)