Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0608
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.9  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   5.1  

>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 191 SCWTCDRTHEWQNFHLRSSLLTTP 262
           SC++  +TH++++F ++SSL   P
Sbjct: 10  SCFSLQKTHQYRSFWIQSSLRALP 33


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 319 TLAFGTANIFSGGTRVTTSSVHLHGSYNMNN 411
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 358 TRVTTSSVHLHG-SYNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 501
           TR   S   L+G +Y  N  NN V+   ++     NN Q  +  S N+N
Sbjct: 213 TRRVVSEGPLNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNSN 261


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 173 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 81
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,664
Number of Sequences: 5004
Number of extensions: 33042
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)