Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0608
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107 28 0.22
02_02_0549 + 11410129-11412180 30 0.97
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 30 1.3
10_02_0061 - 4812903-4812940,4813140-4813536 28 5.2
09_04_0265 + 16233596-16233752,16234206-16234720,16236199-162362... 28 5.2
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 28 5.2
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 28 5.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 5.2
04_04_1587 + 34630678-34632282 28 5.2
03_02_0368 + 7840665-7841975 28 5.2
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 28 5.2
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 27 6.8
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 6.8
07_01_0220 - 1631395-1631496,1632063-1634036 27 9.0
>01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107
Length = 167
Score = 28.3 bits (60), Expect(2) = 0.22
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 375 GGGDPGAAGEDVSCTKSEGELTSLGVPGSPSVIRGHGAGVV 253
GGG G GE + E + V G P V+ AGVV
Sbjct: 10 GGGGDGGGGEVEAAVVVEMATERVAVVGDPGVVEVKAAGVV 50
Score = 23.0 bits (47), Expect(2) = 0.22
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 198 QQDGGEHQRWRQ 163
++ GGE QRWR+
Sbjct: 88 REGGGERQRWRE 99
>02_02_0549 + 11410129-11412180
Length = 683
Score = 30.3 bits (65), Expect = 0.97
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 322 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 501
LA +F+G V ++S HL N D IN+NHVG N N +LAS +N+
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ----DLASRDND 184
Query: 502 FA 507
A
Sbjct: 185 KA 186
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 241 PQMEVLPFVSAITSPARWG*APALAAEPPTILV 143
P LPF S + + AR G APAL+A P LV
Sbjct: 11 PARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 25 WRWRPWSW---QKRPSNLTTTTRSVSPGLRVLDAPRKP 129
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>09_04_0265 +
16233596-16233752,16234206-16234720,16236199-16236229,
16236559-16237001
Length = 381
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 378 TGGGDPGAAGEDVSCTKSEGELTSLGVPGSPSVIRGHGAG 259
+G G P AG+ + T+ +G ++ GVPG V HG G
Sbjct: 240 SGRGGP-VAGDVAAATREKGRASAAGVPGG-GVKGKHGGG 277
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 378 TGGGDPGAAGEDVSCTKSEGELTSL 304
+GGG+PG G++ S TK+ G + L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 360 GAAGEDVSCTKSEGELTSLGVPGSPSVIRGH--GAGVVS 250
GA V +++ GE S G P P+VI GH AGV +
Sbjct: 287 GALSHIVKMSRAIGEEISCGHPAWPAVIHGHYASAGVAA 325
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 189 GGEHQRWRQNHPQSW 145
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
>04_04_1587 + 34630678-34632282
Length = 534
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 375 GGGDPGAAGEDVSCTKSEGELTSLGV--PGSPSVIRGHGAGVVSKELRRWKFCHS*VRSQ 202
GG D A E VSC + G + +L + P P R + G +S L +F + V
Sbjct: 78 GGNDCCGAWEGVSCDAATGRVVALQLEAPPLPPPRRSYMEGALSASLGGLEFLETLVIRD 137
Query: 201 VQQDGG 184
+ + GG
Sbjct: 138 MARIGG 143
>03_02_0368 + 7840665-7841975
Length = 436
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 375 GGGDPGAAGEDVSCT--KSEGELTSLGVPGSPSVIRGHGAGVVSKELRRWKFCHS*VRSQ 202
GG DP A VSC+ + + L + PG +VIR + + R + S
Sbjct: 57 GGADPAAYVAAVSCSDCRFKQRLHAPASPGPGAVIRSLFVSLTRRSTPRSSPSPT---SA 113
Query: 201 VQQDGGEHQRWR 166
DGGE ++WR
Sbjct: 114 SGGDGGESEQWR 125
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 360 GAAGEDVSCTKSEGELTSLGVPGSPSVIRGHGA 262
GA G V +K+ GE G P P+VI GH A
Sbjct: 308 GALGHIVRMSKTIGEEIGCGHPVWPAVIHGHYA 340
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 251 VRNSADGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVS 129
++ S+ + +HK +G +SV RTTH G EV+
Sbjct: 114 LQKECGASNFAKGLEHKGDTLGSVSSVEERTTHAQGRKEVT 154
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 143 YQDCGWFCRQRWCSPPSCWTCDR 211
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
>07_01_0220 - 1631395-1631496,1632063-1634036
Length = 691
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 156 GGSAANAGAHPHLAGLVIALTNGRTSICGVPY*QHPLRDRGSL 284
G + G AG ++ LTNG T + G + PL RGSL
Sbjct: 37 GANVTLDGTATVTAGGLLELTNGTTQLKGHAFFPAPLSFRGSL 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,847
Number of Sequences: 37544
Number of extensions: 296653
Number of successful extensions: 1132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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