Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0608
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.37 
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical...    28   3.5  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z75953-4|CAJ85747.1|  294|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical p...    27   8.0  
U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protei...    27   8.0  
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     27   8.0  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    27   8.0  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 349 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 471
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 245 NSADGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLS 99
           NS DGS    E    SS + V  ++GGR  +  GT+++  + G  K LS
Sbjct: 78  NSTDGSDEEEEITEPSSVLLVMITMGGRMANVVGTMKL--YKGLGKYLS 124


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 207 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 88
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 207 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 88
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical
           protein Y57A10A.11 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 372 GGDPGAAGEDVSCTKSEGELTSLGVPGSPSVIRGHGAG 259
           GGD GA GE      ++GE    GVPG+P     HG G
Sbjct: 401 GGDQGAPGEP----GADGEPGMDGVPGNPGRDGTHGHG 434


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 372 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 286
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 372 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 286
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
            C05C9.3 protein.
          Length = 1225

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 400  NMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 501
            N NN N D    NHNH      + + ++   NNN
Sbjct: 1182 NFNNPNRDFQYPNHNHQHVQYQLHQQHMTVRNNN 1215


>Z75953-4|CAJ85747.1|  294|Caenorhabditis elegans Hypothetical
           protein F57F5.4b protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 132 DFDGTRIVGGSAANAGAHPHLAGLVI--ALTNGRTSICGVPY*QHP 263
           D DGT I GGS  N G +   AG V+  A+ NGR  +  V +  HP
Sbjct: 96  DLDGTVIDGGS-TNFGVNQ--AGYVLHSAIHNGRPEVKCVVHLHHP 138


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 132 DFDGTRIVGGSAANAGAHPHLAGLVI--ALTNGRTSICGVPY*QHP 263
           D DGT I GGS  N G +   AG V+  A+ NGR  +  V +  HP
Sbjct: 413 DLDGTVIDGGS-TNFGVNQ--AGYVLHSAIHNGRPEVKCVVHLHHP 455


>Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 143 YQDCGWFCRQRWCSPPSCWTCDRTHEWQNFHLRSSLLTTPAP*PRITDGEPGTPR 307
           Y D  W C++ W +     T  +   W N  L +    T AP  R T+G  G P+
Sbjct: 529 YTDA-WKCQRNWFND----TMYQQLPWYNEDLYNEAQRTYAPFKRFTEGNFGNPK 578


>Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 143 YQDCGWFCRQRWCSPPSCWTCDRTHEWQNFHLRSSLLTTPAP*PRITDGEPGTPR 307
           Y D  W C++ W +     T  +   W N  L +    T AP  R T+G  G P+
Sbjct: 529 YTDA-WKCQRNWFND----TMYQQLPWYNEDLYNEAQRTYAPFKRFTEGNFGNPK 578


>U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical
           protein C43E11.9 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 149 PGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCHDHGRQRHQYCCEDL 3
           P T E +  + A      GD   +++ + DG +C  + ++R  YC E+L
Sbjct: 3   PLTEEETSLVFAKLASFIGDNVSMLIDRNDGDYCFRNHKERVYYCSENL 51


>U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protein 8
           protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 369 GDPGAAGEDVSCTKSEGELTSLGVPGSPSV 280
           G+PG AGED     ++G +   GVPG P +
Sbjct: 225 GNPGGAGED----GNQGPVGHPGVPGRPGI 250


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 369 GDPGAAGEDVSCTKSEGELTSLGVPGSPSV 280
           G+PG AGED     ++G +   GVPG P +
Sbjct: 225 GNPGGAGED----GNQGPVGHPGVPGRPGI 250


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 132 DFDGTRIVGGSAANAGAHPHLAGLVI--ALTNGRTSICGVPY*QHP 263
           D DGT I GGS  N G +   AG V+  A+ NGR  +  V +  HP
Sbjct: 413 DLDGTVIDGGS-TNFGVNQ--AGYVLHSAIHNGRPEVKCVVHLHHP 455


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 385 LHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 480
           LH S N + L+N   I+N     F  ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,462
Number of Sequences: 27780
Number of extensions: 214709
Number of successful extensions: 818
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)