Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0608
(519 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30180.1 68417.m04291 expressed protein 30 0.81
At3g44170.1 68416.m04735 hypothetical protein 30 1.1
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 29 1.4
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 29 1.9
At4g38430.1 68417.m05431 expressed protein contains Pfam profile... 28 3.3
At4g34000.2 68417.m04825 ABA-responsive element-binding protein ... 28 4.3
At4g34000.1 68417.m04824 ABA-responsive element-binding protein ... 28 4.3
At5g67370.1 68418.m08495 expressed protein similar to unknown pr... 27 5.7
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 5.7
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 5.7
At5g10510.1 68418.m01217 ovule development protein, putative sim... 27 5.7
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 27 5.7
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [... 27 7.6
At5g03270.1 68418.m00276 expressed protein contains Pfam profile... 27 7.6
>At4g30180.1 68417.m04291 expressed protein
Length = 158
Score = 30.3 bits (65), Expect = 0.81
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 7 SSQQY*WRWRPWSWQKRPSNLTTTTRSVSPGLRVLDAPRK 126
S+Q++ W SN TTTT S S G+R+L+ P K
Sbjct: 62 SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101
>At3g44170.1 68416.m04735 hypothetical protein
Length = 155
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = -2
Query: 257 LSVRNSADGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLSPGDTDLV 78
LS N D S + + +M ++ + G N G V G K PGD +V
Sbjct: 30 LSAYNKKDYRSEFKVRPNTVVRMVITNDLFGVKNGNAGFVCAKGGNKVWKRSKPGDRYVV 89
Query: 77 VVVKFDGLFCH 45
V K+DG H
Sbjct: 90 VEFKYDGKMRH 100
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 206 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 105
HK+ MG STS+ G T+H+P V G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 232 PSAEFLTDNTRSVTADH*WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNN 411
PS FL D + WR N + LA+G + GGTRV H + +N
Sbjct: 549 PSQLFLIDPAEEKPS---WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNE 605
Query: 412 LN 417
L+
Sbjct: 606 LH 607
>At4g38430.1 68417.m05431 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 548
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 339 SCTKSEGELTSLGVPGSPSVIRGHG 265
SC + +GE S +P SP V+ G G
Sbjct: 36 SCHRFDGEGASSSIPSSPRVVAGRG 60
>At4g34000.2 68417.m04825 ABA-responsive element-binding protein /
abscisic acid responsive elements-binding factor (ABRE)
/ ABA-responsive elements-binding factor (ABF3)
identical to abscisic acid responsive elements-binding
factor (ABF3) GI:6739280 from [Arabidopsis thaliana];
identical to cDNA abscisic acid responsive
elements-binding factor (ABRE) mRNA, complete cds
GI:6739279
Length = 454
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 391 GSYNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNNFAVL 513
GS NM+ L ++ +H NN N+++GN+ V+
Sbjct: 54 GSMNMDELLKNIWTAEESHSMMGNNTSYTNISNGNSGNTVI 94
>At4g34000.1 68417.m04824 ABA-responsive element-binding protein /
abscisic acid responsive elements-binding factor (ABRE)
/ ABA-responsive elements-binding factor (ABF3)
identical to abscisic acid responsive elements-binding
factor (ABF3) GI:6739280 from [Arabidopsis thaliana];
identical to cDNA abscisic acid responsive
elements-binding factor (ABRE) mRNA, complete cds
GI:6739279
Length = 449
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 391 GSYNMNNLNNDVAIINHNHVGFNNNIQRINLASGNNNFAVL 513
GS NM+ L ++ +H NN N+++GN+ V+
Sbjct: 54 GSMNMDELLKNIWTAEESHSMMGNNTSYTNISNGNSGNTVI 94
>At5g67370.1 68418.m08495 expressed protein similar to unknown
protein (gb|AAC18972.1)
Length = 327
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 143 YQDCGWFCRQRWCSPPSCWTCDR 211
Y++ GW+ Q W PP DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 58 PSNLTTTTRSVSPGLRVLDAPRKPL 132
PS+ TTTTR+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 58 PSNLTTTTRSVSPGLRVLDAPRKPL 132
PS+ TTTTR+ SP + ++ PL
Sbjct: 27 PSSSTTTTRATSPSSTISESSNSPL 51
>At5g10510.1 68418.m01217 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 566
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 400 NMNNLNNDVAIINHNHVGFNNNIQRINLASGNNN 501
N+NN N + N NH NNN +RIN + N+N
Sbjct: 187 NVNN-NTNHRNDNDNHYRGNNNGERINNNNNNDN 219
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -2
Query: 221 IRECDHKSSKMGVSTSVGGRTTH-NPGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCH 45
+ C+ K+ K + V R T+E S + +TL P +TD + V+ F
Sbjct: 92 VLSCNSKTDKATLLAKVVQRVRELKQQTLETSD---SDQTLLPSETDEISVLHFGDYSND 148
Query: 44 DHGRQRHQYCCED 6
H + CCED
Sbjct: 149 GHIIFKASLCCED 161
>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
[Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
thaliana] GI:6960305
Length = 84
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 286 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 417
WR N + LA+G + GGTRV H + +N L+
Sbjct: 29 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEEWILNELH 72
>At5g03270.1 68418.m00276 expressed protein contains Pfam profile
PF03641: decarboxylase family protein
Length = 229
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 310 RQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHN 444
R+ L +G +I G + + +VH G +N NN ND A+ H+
Sbjct: 49 RKIDLVYGGGSI--GLMGLVSQAVHDGGRHNNNNNGNDDALFCHS 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,705
Number of Sequences: 28952
Number of extensions: 202885
Number of successful extensions: 705
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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