Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0607
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    85   1e-17
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    80   3e-16
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.55 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   5.2  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.0  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 40/58 (68%), Positives = 47/58 (81%)
 Frame = +3

Query: 81  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPL
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPL 65


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 37/54 (68%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPL
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPL 57


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 105 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 230
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +3

Query: 81  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           APK +  KK  KT++  + +  ++        G K+ +K +R+G+  LVI+A +  P+
Sbjct: 33  APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 675 TTVNNFIQLHLLIHINTTYG 616
           T V+  I+LHL  H N TYG
Sbjct: 548 TLVSLLIRLHLDFHTNNTYG 567


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +3

Query: 495 HSFLKLFCWITMWGTYGVVFKLDTSLWQV 581
           H+F + + ++  W T   V   D ++W +
Sbjct: 77  HAFTRSYMYVKKWATKSAVVLADQNVWNI 105


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 648  HLLIHINTTYGLH 610
            HLL++++ TYGLH
Sbjct: 2483 HLLVYLSKTYGLH 2495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,791
Number of Sequences: 5004
Number of extensions: 62374
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)