Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0607
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    81   1e-15
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    74   1e-13
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    71   1e-12
03_05_0830 + 28034179-28035492                                         29   4.1  
03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447     29   5.4  
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109...    28   7.1  
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    28   9.4  

>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           MVAAKK KK+ ++IN++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PPL
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPL 55


>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 34/54 (62%), Positives = 41/54 (75%)
 Frame = +3

Query: 93  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           V A  QKK+ ++IN++L LVMKSGKY LGYK  LKTLR  K KL+I+A N PPL
Sbjct: 43  VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPL 96


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 33/48 (68%), Positives = 36/48 (75%)
 Frame = +3

Query: 111 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           KK  E IN++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PPL
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPL 173


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


>03_06_0525 + 34511025-34512168,34512710-34512886,34513131-34513447
          Length = 545

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 741 RTFLRLTNHSVDSNNIRHSQVPTTVNNFIQLH 646
           RT +   N   DS+   HS +P TV     LH
Sbjct: 380 RTVIHEPNGPQDSSQYEHSSIPATVKKLFNLH 411


>02_05_0973 +
           33209385-33209456,33210517-33210721,33210810-33210975,
           33211268-33211490,33211928-33212004,33212090-33212183,
           33212202-33212271,33212350-33212447,33212565-33212692,
           33212772-33212900,33213013-33213421,33213984-33214105,
           33214224-33214313,33215092-33215304,33215453-33215584,
           33216258-33216333,33216403-33216420
          Length = 773

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -2

Query: 583 LTCQSEVSSLKTTP*VP 533
           LTC+SEVS+L+ TP +P
Sbjct: 689 LTCESEVSNLRYTPMIP 705


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 141 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPLGEAT 266
           L LV ++ +  CL  G K+ +K++R+G+  L IIA N  P+   T
Sbjct: 33  LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVIT 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,299,398
Number of Sequences: 37544
Number of extensions: 338102
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)