Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0607
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)        76   3e-14
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = +3

Query: 120 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLGEATEK*SFPILVK- 296
           +ESINSRLALVMKSGK+ LG K TLKTLRQGKAKLVIIA N P L   +E   + +L K 
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQL-RKSEIEYYAMLAKT 59

Query: 297 GMHMESY*QRSMDSLCG 347
           G+H  +     + + CG
Sbjct: 60  GVHHYTGNNIELGTACG 76


>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 759 QHQHISRTFLRLTNHSVDSNNIRHSQVPTTVNNFIQ-LHLLIHINT 625
           QH H +RT   LT H+  +  +RH+    T+N   Q  H    +NT
Sbjct: 182 QHAHSARTLNTLTQHAHSTRTLRHAHSTCTLNMHTQHAHSTRSLNT 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,609,178
Number of Sequences: 59808
Number of extensions: 399099
Number of successful extensions: 929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)