Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0607
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    84   9e-17
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    82   3e-16
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    79   3e-15
At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom...    30   1.5  
At4g00350.1 68417.m00046 MATE efflux family protein similar to r...    28   6.0  
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   6.0  
At1g17240.1 68414.m02100 leucine-rich repeat family protein cont...    28   6.0  
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    28   7.9  
At1g12950.1 68414.m01504 MATE efflux family protein similar to r...    28   7.9  

>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLGEATE 269
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPL   +E
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPL-RRSE 59

Query: 270 K*SFPILVK-GMHMESY*QRSMDSLCG 347
              + +L K G+H  +     + + CG
Sbjct: 60  IEYYAMLAKVGVHHYNRNNVDLGTACG 86


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLGEATE 269
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPL   +E
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPL-RRSE 59

Query: 270 K*SFPILVK-GMHMESY*QRSMDSLCG 347
              + +L K G+H  +     + + CG
Sbjct: 60  IEYYAMLAKVGVHRYNGNNVDLGTACG 86


>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLGEATE 269
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPL   +E
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPL-RRSE 59

Query: 270 K*SFPILVK-GMHMESY*QRSMDSLCG 347
              + +L K G+H  +     + + CG
Sbjct: 60  IEYYAMLAKVGVHHYNGNNVDLGTACG 86


>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam PF00646: F-box
           domain; contains Pfam PF02373: jmjC domain; similar to
           apoptotic cell clearance receptor PtdSerR (GI:11037740)
           [Mus musculus]
          Length = 916

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 593 KHNSYLPK*SIEFKDYSIGSPHCD 522
           +HNS+ P   ++F D +IG P CD
Sbjct: 796 QHNSWRPSHILDFSDLTIGDPICD 819


>At4g00350.1 68417.m00046 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554
           Uncharacterized membrane protein family
          Length = 542

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 483 SIKLHSF-LKLFCWITMWGTYGVVFKLDTSLWQVRIMFSIQIFYVI 617
           ++ LH F L LF  +  WG  G     D S W + I    Q+ YV+
Sbjct: 248 ALTLHIFILYLFINVFKWGLNGAAAAFDVSAWGIAI---AQVVYVV 290


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 120 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 251
           I  +   +++  KS  Y  GY Q+ +T R  + KL+ I K  PP
Sbjct: 7   IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50


>At1g17240.1 68414.m02100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 729

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 665 LTVVGT*LCRILLESTEWLVNLRKVRLM 748
           L + G   CR+  E   WL+NL KV +M
Sbjct: 471 LRIFGVGACRLRGEIPAWLINLNKVEVM 498


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325


>At1g12950.1 68414.m01504 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           MatE
          Length = 522

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 492 LHSFLKLFCWITM----WGTYGVVFKLDTSLWQVRIMFSIQIF 608
           +HSF   F W+ M    WG  G+   L+TS W + +   + IF
Sbjct: 230 IHSF---FTWLVMSRLHWGLPGLALVLNTSWWVIVVAQLVYIF 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,813
Number of Sequences: 28952
Number of extensions: 297781
Number of successful extensions: 632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)