Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0606
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 29 1.6
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 3.6
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 3.6
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 27 6.3
SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22) 27 6.3
SB_29879| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_9891| Best HMM Match : KE2 (HMM E-Value=1) 26 8.3
>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 48.4 bits (110), Expect = 2e-06
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +2
Query: 38 LDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNG 211
+ + F Q D VR+ K D++ L Y L+KQAT G ++P +V AKW++W+
Sbjct: 13 VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCKTSRPGFWDIVGKAKWESWHQ 71
Query: 212 RKGISQDDAKKQYIE 256
+ Q+ A K Y++
Sbjct: 72 HGKMPQEKAMKIYVQ 86
>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.5 bits (63), Expect = 0.89
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 263 SAFRCIASWHRLGRCLCDRSMPSTWRSPQDRWAGQC 156
SAFR + RLGRC + R D W G+C
Sbjct: 453 SAFRICDTKIRLGRCALSEQLDPARRVYWDTWRGKC 488
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 28.7 bits (61), Expect = 1.6
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 51 SNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSP-AVLWRAPSGRHGTVAKASP 227
S+RS + P P+ R + + T P +++T SP A R+PS K SP
Sbjct: 289 SSRSDSGDYSAAPPPLPERRMLNSTNTPTSPTLIVTHASPFASPGRSPSNSPRPSPKNSP 348
Query: 228 KTMPRSN 248
+T PRS+
Sbjct: 349 RTSPRSS 355
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 162 PSPAVLWRAPSGRHGTVAKASPKTMPR 242
P P +AP+ R GT ASP T P+
Sbjct: 207 PEPVPTPKAPASRPGTKRPASPSTPPK 233
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 21 DNTKCLSTSNSNRSPIRLGTG-RPSPVTMRTLRCTPCTSR 137
DN CL T+ S+ + + GTG RP+ T+ T P +R
Sbjct: 78 DNGLCLPTTASSSAAVPAGTGARPAIFTLATPNRRPTETR 117
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 162 PSPAVLWRAPSGRHGTVAKASPKTMPR 242
P P +AP+ R GT ASP T P+
Sbjct: 31 PEPVPTPKAPASRPGTKRPASPSTPPK 57
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 18 KDNTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 137
KD T ++ S S R+ + L GRP + +T T C S+
Sbjct: 64 KDLTNSIA-SGSERNSLHLQPGRPFRINTKTWPSTHCASK 102
>SB_58258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 59 VADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKAWN 208
VA + ++K SD+ +L L +A++GD ++A P + S K+WN
Sbjct: 302 VAHGQQRRRSKISDELSLVASLLIHEASVGDDDVALPE-VSLSDVMKSWN 350
>SB_56862| Best HMM Match : TPR_2 (HMM E-Value=1.4e-22)
Length = 300
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -1
Query: 252 MYCFLASSWEM---PLRPFHAFHLALSTRPLGWAMLTSPMVACLYREYSARF 106
++CFL W M PL P HL + + + S M+ C+Y E F
Sbjct: 28 IFCFLIM-WGMTMSPLTPDQQIHLLKVCYDISYLLGDSTMMMCVYLEAGGTF 78
>SB_29879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 192 SGRHGTVAKASPKTMPRSNTSKCGETPL 275
+G H ++ P MP+ N + G+TPL
Sbjct: 22 AGSHLSIILEKPCHMPKCNIANAGDTPL 49
>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
Length = 572
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 226 GDAFATVPCLPLGALHKTAGLG 161
GD A P LP ++H T GLG
Sbjct: 347 GDLAAPTPILPPQSVHNTGGLG 368
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,528,781
Number of Sequences: 59808
Number of extensions: 270924
Number of successful extensions: 958
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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