Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0606
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   8.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   8.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 198 FHLALSTRPLGWAMLTSP 145
           FHL ++T P G A + SP
Sbjct: 363 FHLYINTAPCGDARIFSP 380


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 36  LSTSNSNRSPIRLGTGRPSPVTMRTL 113
           LST+  ++ P   G  + SPV+M  L
Sbjct: 372 LSTALMSQPPPNFGVSQVSPVSMSAL 397


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 210  PFHAFHLALSTRPLGWAMLTSPMV 139
            PF + H  L+ RPL     T PM+
Sbjct: 1040 PFVSNHDILNLRPLSMEKGTRPMI 1063


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 92   PSDDENLALYSLYKQATIGDVNIAQPSGLVE 184
            P+D+  +  Y+++ +   GD + AQ S  V+
Sbjct: 1390 PTDNAPIHGYTIHYKPEFGDWDTAQISSTVQ 1420


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 147 VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSK 257
           ++ T+P    + +   G+H  ++K   KTM   + +K
Sbjct: 96  ILTTMPLLINVVKYLGGKHKFISKKIKKTMENKDITK 132


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 222 SPKTMPRSNTSKCGET 269
           SP++  RSNTS   +T
Sbjct: 89  SPESRDRSNTSNTSKT 104


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 126 REYSARFSSSL 94
           R YS RFSSS+
Sbjct: 22  RRYSKRFSSSI 32


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 162 PSPAVLWRAPSGRHGTVAKASPKT 233
           P+P   W A +G    +  + P+T
Sbjct: 265 PTPEYRWYAQTGSEPMLVLSGPRT 288


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +3

Query: 162 PSPAVLWRAPSGRHGTVAKASPKT 233
           P+P   W A +G    +  + P+T
Sbjct: 265 PTPEYRWYAQTGSEPMLVLSGPRT 288


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   LPPDLKR*HKMSLDEQFKQVADKVRN 79
           L  ++KR  ++      KQVAD++RN
Sbjct: 384 LDEEMKRTDELLYQMIPKQVADRLRN 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,142
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)