Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0603
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    60   8e-11
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   2.9  
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    25   5.1  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.1  
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    24   6.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    24   9.0  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   9.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   9.0  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 60.5 bits (140), Expect = 8e-11
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = +2

Query: 17  YEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS 181
           YE +DF       + FDSY++P  +++    R L+VD               T+ DVIHS
Sbjct: 124 YELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHS 183

Query: 182 *TIPSLGIKVDANPGRLNQTNFFI 253
             +PSLGIK D  P RLNQ +  I
Sbjct: 184 WAVPSLGIKCDCIPSRLNQVSLSI 207



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 256 RPGIFFGQCSEICGANHSFIPIV 324
           R G+F+GQCSE+CG  HS +PIV
Sbjct: 209 REGLFYGQCSELCGVLHSSMPIV 231


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 138 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 25
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 147 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 37
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLM 57


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 116 DYLHLIVGIHYFLFHWMGLY 57
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 147 RIWLFIGKIIRLSTSNSRNSLFFISLDGIIYESNSIL 37
           ++W+   +I  +S +NSR ++  +  DG++    +++
Sbjct: 21  KVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLM 57


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 174 FIHEQFLH*VLKLMLIQVD*IKQTSLLSTWNFFWSMFRNLW 296
           FI+  F+H ++     +   +   S  + W  FWS    LW
Sbjct: 454 FIYNCFIHKLVMGDKFEFLPLMLLSTYAAWGIFWSFVSLLW 494


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 86  YFLFHWMGLYM-SQIQYY*NLN 24
           YF+ HW G Y+ S +Q Y + N
Sbjct: 150 YFVPHWNGTYLASNVQIYNSSN 171


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 171 TSVAVIIIRIWLFIGKIIRLSTSNSRNSLFFISLDGIIYES 49
           TS++   + I    G I+RL    S N + F SL   I E+
Sbjct: 822 TSISNTRLAIQTPTGNIVRLREERSGNGVIFFSLSLTINET 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,350,669
Number of Sequences: 5004
Number of extensions: 24133
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)