Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0603
         (376 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        86   1e-17
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        86   1e-17
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        86   1e-17
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    29   1.6  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   Q*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVI 175
           Q Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD               TA DVI
Sbjct: 111 QWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVI 170

Query: 176 HS*TIPSLGIKVDANPGRLNQTNFFI 253
           HS  +P+L +K+DA PGRLNQT FFI
Sbjct: 171 HSFAVPALAVKMDAVPGRLNQTGFFI 196



 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 20/23 (86%), Positives = 23/23 (100%)
 Frame = +1

Query: 256 RPGIFFGQCSEICGANHSFIPIV 324
           RPG+F+GQCSEICGANHSF+PIV
Sbjct: 198 RPGVFYGQCSEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   Q*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVI 175
           Q Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD               TA DVI
Sbjct: 111 QWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVI 170

Query: 176 HS*TIPSLGIKVDANPGRLNQTNFFI 253
           HS  +P+L +K+DA PGRLNQT FFI
Sbjct: 171 HSFAVPALAVKMDAVPGRLNQTGFFI 196



 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 20/23 (86%), Positives = 23/23 (100%)
 Frame = +1

Query: 256 RPGIFFGQCSEICGANHSFIPIV 324
           RPG+F+GQCSEICGANHSF+PIV
Sbjct: 198 RPGVFYGQCSEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   Q*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVI 175
           Q Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD               TA DVI
Sbjct: 111 QWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVI 170

Query: 176 HS*TIPSLGIKVDANPGRLNQTNFFI 253
           HS  +P+L +K+DA PGRLNQT FFI
Sbjct: 171 HSFAVPALAVKMDAVPGRLNQTGFFI 196


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 119 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFSI 6
           YD +H    IHY   H+  ++   IQYY   NIH ++I
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYNI 64


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 336 NTFNYNRYKTMISSTNF*TLTKKNSRSIIKKFV*FNRPGLAST 208
           NT      ++++ S NF T  K N+R   ++ V  NR GLA +
Sbjct: 841 NTATNEPSESLVPSNNFFTTDKDNTRGFGRENVVINREGLAKS 883


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,733,144
Number of Sequences: 59808
Number of extensions: 137274
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)