Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0601
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   1.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.9  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   5.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 324 RSNATICA*TGLSFGTASARNASGVWPAHVAGHQVSI 214
           R+N   C   G  F +    N S V   H  GH++++
Sbjct: 211 RANPNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEIAV 247


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 324 RSNATICA*TGLSFGTASARNASGVWPAHVAGHQVSI 214
           R+N   C   G  F +    N S V   H  GH++++
Sbjct: 218 RANPNGCQIRGTFFVSHKYTNYSAVQDLHRRGHEIAV 254


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +2

Query: 230 PATCAGHTPEAFRADAVPNDNPVYAQMVALLRQIQSNAE 346
           P  C+ ++PE    +    + P Y+    ++  I+++ E
Sbjct: 63  PLDCSKNSPEKESEEKKSKEKPPYSYNALIMMAIRNSPE 101


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 502 TCIIVKAQGADDCSWN 549
           TC+   A G+DD S N
Sbjct: 874 TCVATNAFGSDDTSIN 889


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,422
Number of Sequences: 336
Number of extensions: 2836
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)