Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0601
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 68 1e-12
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 32 0.073
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 28 1.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 3.6
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 3.6
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 25 6.3
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar... 25 6.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.3
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 8.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 8.3
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 67.7 bits (158), Expect = 1e-12
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Frame = +3
Query: 6 PDARSLEKINATENAISAVAKIIKYNHSQI-NRDEIITHWLTWLPVTEDTEEAPHVYALL 182
PDAR E+I ATEN A+ KI ++ ++ + D+++T+W+ LPVT D ++AP+ Y L
Sbjct: 962 PDARDEEQIYATENICVAICKICRFCSQRVQDLDKVVTYWINTLPVTHDEDDAPYAYTFL 1021
Query: 183 CELASSGHGALSTPDAPQRVLATLPKRFAPTLYQTITLS 299
EL H A+++ P ++ L + FA + + TL+
Sbjct: 1022 AELMEQNHVAVAS-QMP-TIITILAETFASGVLRGRTLT 1058
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 31.9 bits (69), Expect = 0.073
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 36 ATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTED-TEEAPHVYALL 182
A +NAI ++++I +N + I D+++ + LP+ ED E AP + +L
Sbjct: 952 ALDNAIGCISRLILHNQNAIPVDQVLPIVFSKLPLKEDYLENAPLYHMIL 1001
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 195 SSGHGALSTPDAPQRVLATLPKRFAPTLYQTITLSMRKWLHYFDRYSQM-----PNYLIH 359
+S H ++S+ D P R + + PTLY + LH+ + YS + P+Y+IH
Sbjct: 347 TSSHLSVSS-DCPSRHSSDIRNHSCPTLYHDDAEDIYYDLHHTESYSNINLTKTPDYVIH 405
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 140 HR*PCQPMRDDFIPIYLRMIVFDNFSDG 57
HR PC + DF P L+ +F + SDG
Sbjct: 359 HRQPCHVVYTDFRPTPLQHYLFPSGSDG 386
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 125 QPMRDDFIPIYLRMIVFDNFSDGRYSIFSCID 30
+P DF+ ++ M++ NFS RY FS ++
Sbjct: 46 RPYSKDFLELFSTMVISTNFSRNRYR-FSYVE 76
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 295 CLCANGCITSTDTV 336
CL +GCITS +TV
Sbjct: 64 CLACSGCITSAETV 77
>SPBP8B7.08c |||leucine carboxyl methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = +3
Query: 21 LEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTE 146
L+ ++ E + + Y +S++ ++ +T TW+P+ E
Sbjct: 223 LKTLDCYETTEQQRMRFLDYGYSEVIAEDFLTIEETWIPIEE 264
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 391 SSSDSSVHIVTTPYRRPAPYSGYS 462
+SS SSV+ V TP P PY Y+
Sbjct: 210 TSSSSSVNSVHTPVMVPNPYFQYN 233
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 140 HR*PCQPMRDDFIPIYLRMIVFDNFSDGRYSIFSCIDLFK 21
H+ PC + D+ P L+ ++ +DG Y + + FK
Sbjct: 286 HKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFK 325
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 251 TPEAFRADAVPNDNPVYAQMVALLRQIQSNAELFNSCLMTL 373
TP AF N NP + + RQ +N +N + L
Sbjct: 498 TPRAFNVPIAQNKNPSELEFLEHARQYLANESKYNEFIKLL 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,676
Number of Sequences: 5004
Number of extensions: 45241
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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