Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0601
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    48   4e-06
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    46   3e-05
01_01_0514 - 3739843-3739933,3740120-3740212,3740346-3740453,374...    33   0.23 
07_03_0039 - 12718972-12720699                                         32   0.30 
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143...    28   6.5  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/62 (33%), Positives = 37/62 (59%)
 Frame = +3

Query: 6    PDARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLC 185
            P+A  L+   A +NA+SA+ KI +++   I+  +++  WL+ LP+  D  EA  V+  LC
Sbjct: 914  PNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIEAKIVHEQLC 973

Query: 186  EL 191
             +
Sbjct: 974  TM 975


>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
            23204820-23204956,23205050-23205116,23205212-23205278,
            23205356-23205441,23206061-23206153,23206337-23206522,
            23207316-23207372,23207455-23207582,23207662-23207731,
            23207815-23207950,23208378-23208529,23208606-23208680,
            23208765-23208929,23209063-23209128,23209229-23209333,
            23209929-23210132,23210462-23211715
          Length = 1123

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +3

Query: 6    PDARSLEKINATENAISAVAKIIKYNHSQINRDEIITHWLTWLPVTEDTEEAPHVYALLC 185
            P+A+  + I A +NA+SA+ KI +++   I+  ++I  WL  LP+ +D  EA  V+  L 
Sbjct: 983  PEAKHADNIMAYDNAVSALGKICQFHRDGIDAAQVIPAWLGCLPIKDDKIEAKVVHDQLS 1042

Query: 186  ELASSGHGALSTP 224
             +       +  P
Sbjct: 1043 SMVERSDADILGP 1055


>01_01_0514 -
           3739843-3739933,3740120-3740212,3740346-3740453,
           3740559-3740616,3740778-3741012
          Length = 194

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 110 DFIPIYLRMIVFDNFSDGRYSIF 42
           +F+P++LR   +DN +D RY++F
Sbjct: 161 NFVPLFLRDFAYDNVADNRYAVF 183


>07_03_0039 - 12718972-12720699
          Length = 575

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 204 HGALSTPDAPQRVLATLPKRFAPTLYQTITLSMRKWLHYFDRYSQMPNYLIHV 362
           +G L    AP  VLA   KRF   LY     + + WL  F     M  YL ++
Sbjct: 515 NGLLRRTLAPATVLANSEKRFISNLYNVHPAAPKLWLECFSSRKHMEYYLRNI 567


>06_01_0185 -
           1437693-1437834,1437969-1438078,1438214-1438264,
           1438877-1439122,1439244-1439315,1439614-1439648,
           1439755-1439845,1440546-1440610,1440733-1440813,
           1441020-1441137,1441535-1441627,1441865-1441997,
           1442471-1442503,1443264-1443343,1443444-1443549,
           1443621-1443795,1443884-1443980,1444819-1445251,
           1445329-1445459,1446052-1446341,1446429-1447002
          Length = 1051

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 363 RHELNNSAFDCICRSNATICA*TGLSFGTASARNASGVWPAHVA 232
           RH    S+F      NA  CA +G SFG       + V+P+ VA
Sbjct: 327 RHAAAISSFSAFVAENAPSCALSGFSFG-GVCEPCNAVFPSPVA 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,767
Number of Sequences: 37544
Number of extensions: 289805
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)